miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 140288 0.66 0.808093
Target:  5'- gCGUUUuugggCCUcUCGGCCaaggccuGCCGGCgGCu -3'
miRNA:   3'- gGCAAA-----GGGuAGCCGGc------CGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 119532 0.66 0.808093
Target:  5'- nCGgacCCCucguccgCGGCCGucGCCGGCCa- -3'
miRNA:   3'- gGCaaaGGGua-----GCCGGC--CGGCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 86703 0.66 0.808093
Target:  5'- cCCGgucgCUCGUCGaaGCCGcCCGGCCa- -3'
miRNA:   3'- -GGCaaa-GGGUAGC--CGGCcGGCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 18807 0.66 0.808093
Target:  5'- gCCGg--CCaacggGUCGGCgaccuCGGCCGG-CGCg -3'
miRNA:   3'- -GGCaaaGGg----UAGCCG-----GCCGGCCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 81113 0.66 0.803121
Target:  5'- aCUGUUUCgaCGUCGGCaucuaucaccaCGGCCGCu -3'
miRNA:   3'- -GGCAAAGg-GUAGCCGgccg-------GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 114198 0.66 0.79978
Target:  5'- gCGg--CgCCA-CGGCCGGCgucucCGGCgGCa -3'
miRNA:   3'- gGCaaaG-GGUaGCCGGCCG-----GCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 96744 0.66 0.79978
Target:  5'- gCCGgcgcgUCUCGcaagCGGCCGGC-GGUCGa -3'
miRNA:   3'- -GGCaa---AGGGUa---GCCGGCCGgCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 90412 0.66 0.79978
Target:  5'- aCGUgag-CAUCGGCCGuCCcgaguGGCCGCu -3'
miRNA:   3'- gGCAaaggGUAGCCGGCcGG-----CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 14990 0.66 0.79978
Target:  5'- cCCGgcagcagcUCCUcgggCGGUcuCGGCUGGCUGCu -3'
miRNA:   3'- -GGCaa------AGGGua--GCCG--GCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 19363 0.66 0.79978
Target:  5'- cCCGccccgCCCGgaUCgGGCgGGCCGGUCa- -3'
miRNA:   3'- -GGCaaa--GGGU--AG-CCGgCCGGCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 46978 0.66 0.79978
Target:  5'- aCCGUgUUCCuCGUCccccGCCGGCaCGGCaagaCGUg -3'
miRNA:   3'- -GGCA-AAGG-GUAGc---CGGCCG-GCCG----GCG- -5'
11104 3' -61.1 NC_002794.1 + 37259 0.66 0.79978
Target:  5'- cUCGcucUCCGUCGGCgGGCgcgCGGgCGCg -3'
miRNA:   3'- -GGCaaaGGGUAGCCGgCCG---GCCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 89911 0.66 0.79978
Target:  5'- aUCGg--CCCGUUGGCgcuagaGGCgCGGgCGCc -3'
miRNA:   3'- -GGCaaaGGGUAGCCGg-----CCG-GCCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 112554 0.66 0.79978
Target:  5'- gCGgggcUCgCCGcCGGCCacCCGGCCGCu -3'
miRNA:   3'- gGCaa--AG-GGUaGCCGGccGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 124822 0.66 0.79978
Target:  5'- aCGUgcgaCCUGUCGGCgaccaucugcaUGG-CGGCCGCc -3'
miRNA:   3'- gGCAaa--GGGUAGCCG-----------GCCgGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 128019 0.66 0.798941
Target:  5'- gCCGc--CCCGUCGGCUGacaccccGCgGGCCa- -3'
miRNA:   3'- -GGCaaaGGGUAGCCGGC-------CGgCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 33430 0.66 0.79726
Target:  5'- cUCGggcuggUCCCGgugcaggaccUCGGgCGGCCGccggacgcgcccacGCCGCu -3'
miRNA:   3'- -GGCaa----AGGGU----------AGCCgGCCGGC--------------CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 14548 0.66 0.794728
Target:  5'- cUCGcc-CCCGUCGacgcgcgggaggcgaGCCGGCCgaccgaagcgGGCCGUg -3'
miRNA:   3'- -GGCaaaGGGUAGC---------------CGGCCGG----------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 148566 0.66 0.792185
Target:  5'- --cUUUCUgcUCGGacugaucugcgagcaCGGCCGGCCGCc -3'
miRNA:   3'- ggcAAAGGguAGCCg--------------GCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 102470 0.66 0.791334
Target:  5'- gCGg--CgCGUCGG-CGuGCCGGCCGg -3'
miRNA:   3'- gGCaaaGgGUAGCCgGC-CGGCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.