miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 140288 0.66 0.808093
Target:  5'- gCGUUUuugggCCUcUCGGCCaaggccuGCCGGCgGCu -3'
miRNA:   3'- gGCAAA-----GGGuAGCCGGc------CGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 90412 0.66 0.79978
Target:  5'- aCGUgag-CAUCGGCCGuCCcgaguGGCCGCu -3'
miRNA:   3'- gGCAaaggGUAGCCGGCcGG-----CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 96744 0.66 0.79978
Target:  5'- gCCGgcgcgUCUCGcaagCGGCCGGC-GGUCGa -3'
miRNA:   3'- -GGCaa---AGGGUa---GCCGGCCGgCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 114198 0.66 0.79978
Target:  5'- gCGg--CgCCA-CGGCCGGCgucucCGGCgGCa -3'
miRNA:   3'- gGCaaaG-GGUaGCCGGCCG-----GCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 84967 0.66 0.791334
Target:  5'- gCGgaUCCU--UGGCC--CCGGCCGCg -3'
miRNA:   3'- gGCaaAGGGuaGCCGGccGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 125313 0.66 0.791334
Target:  5'- gCCGUUcgCCCG-C-GCCGaGCCGGagCGCg -3'
miRNA:   3'- -GGCAAa-GGGUaGcCGGC-CGGCCg-GCG- -5'
11104 3' -61.1 NC_002794.1 + 43493 0.66 0.791334
Target:  5'- gCGgaUCCCcUCcGCCaGGCCGGUgaaagCGCg -3'
miRNA:   3'- gGCaaAGGGuAGcCGG-CCGGCCG-----GCG- -5'
11104 3' -61.1 NC_002794.1 + 193912 0.66 0.791334
Target:  5'- cUCGUccucUCCCAcuucuUCGGCCaccGCCGGCUccgGCc -3'
miRNA:   3'- -GGCAa---AGGGU-----AGCCGGc--CGGCCGG---CG- -5'
11104 3' -61.1 NC_002794.1 + 95847 0.66 0.791334
Target:  5'- gCGg--CCgGggaggCGGCgGGCgGGCCGUu -3'
miRNA:   3'- gGCaaaGGgUa----GCCGgCCGgCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 114734 0.66 0.791334
Target:  5'- uCCGgg-UUCGUCGaGCCGGC--GCCGCc -3'
miRNA:   3'- -GGCaaaGGGUAGC-CGGCCGgcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 102470 0.66 0.791334
Target:  5'- gCGg--CgCGUCGG-CGuGCCGGCCGg -3'
miRNA:   3'- gGCaaaGgGUAGCCgGC-CGGCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 128019 0.66 0.798941
Target:  5'- gCCGc--CCCGUCGGCUGacaccccGCgGGCCa- -3'
miRNA:   3'- -GGCaaaGGGUAGCCGGC-------CGgCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 33430 0.66 0.79726
Target:  5'- cUCGggcuggUCCCGgugcaggaccUCGGgCGGCCGccggacgcgcccacGCCGCu -3'
miRNA:   3'- -GGCaa----AGGGU----------AGCCgGCCGGC--------------CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 148566 0.66 0.792185
Target:  5'- --cUUUCUgcUCGGacugaucugcgagcaCGGCCGGCCGCc -3'
miRNA:   3'- ggcAAAGGguAGCCg--------------GCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 14548 0.66 0.794728
Target:  5'- cUCGcc-CCCGUCGacgcgcgggaggcgaGCCGGCCgaccgaagcgGGCCGUg -3'
miRNA:   3'- -GGCaaaGGGUAGC---------------CGGCCGG----------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 123443 0.66 0.791334
Target:  5'- aCCGUcgCCgAgCGGCUGGCCGaGCa-- -3'
miRNA:   3'- -GGCAaaGGgUaGCCGGCCGGC-CGgcg -5'
11104 3' -61.1 NC_002794.1 + 122667 0.67 0.75637
Target:  5'- gCGg--CgCAggccCGGCUGuGCCGGUCGCg -3'
miRNA:   3'- gGCaaaGgGUa---GCCGGC-CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 123250 0.67 0.75637
Target:  5'- cCUGUgccacUUUCGcCGGCUGGuCCGGgCCGCg -3'
miRNA:   3'- -GGCAa----AGGGUaGCCGGCC-GGCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 51372 0.67 0.75637
Target:  5'- gCCGc--CCCGUcCGGCCGGCgacaGG-CGCc -3'
miRNA:   3'- -GGCaaaGGGUA-GCCGGCCGg---CCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 81317 0.67 0.75637
Target:  5'- ----cUCCCGUCGGCCaaGCCGcgguacgcuccGCCGUc -3'
miRNA:   3'- ggcaaAGGGUAGCCGGc-CGGC-----------CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.