Results 61 - 80 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11104 | 3' | -61.1 | NC_002794.1 | + | 61153 | 0.67 | 0.741927 |
Target: 5'- cCCGac-CCCGagcgcgcgguccggaUCGG-CGGCUGGUCGCu -3' miRNA: 3'- -GGCaaaGGGU---------------AGCCgGCCGGCCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 86366 | 0.67 | 0.741927 |
Target: 5'- aCCGgaugCCCcg-GGCCGaGCCgggacggaugcuccgGGCCGCg -3' miRNA: 3'- -GGCaaa-GGGuagCCGGC-CGG---------------CCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 86534 | 0.67 | 0.741927 |
Target: 5'- aCCGgaugCCCcg-GGCCGaGCCgggacggaugcuccgGGCCGCg -3' miRNA: 3'- -GGCaaa-GGGuagCCGGC-CGG---------------CCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 61810 | 0.67 | 0.738282 |
Target: 5'- cCCGcucaUCuCCggCGGCC-GCCGGCgGCc -3' miRNA: 3'- -GGCaa--AG-GGuaGCCGGcCGGCCGgCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 82470 | 0.67 | 0.738282 |
Target: 5'- cUCGacg-CCGUCGGCCuccgcgacgcGGCCcGCCGCg -3' miRNA: 3'- -GGCaaagGGUAGCCGG----------CCGGcCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 86174 | 0.67 | 0.741927 |
Target: 5'- aCCGgaugCCCcg-GGCCGaGCCgggacggaugcuccgGGCCGCg -3' miRNA: 3'- -GGCaaa-GGGuagCCGGC-CGG---------------CCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 112094 | 0.67 | 0.738282 |
Target: 5'- cCCGUUgcgcgUCCAggcgCGGCCGGgacgaCGG-CGCg -3' miRNA: 3'- -GGCAAa----GGGUa---GCCGGCCg----GCCgGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 67537 | 0.67 | 0.74737 |
Target: 5'- uCCGgcuugagCCC-UCcGCCcgGGCCGcGCCGCa -3' miRNA: 3'- -GGCaaa----GGGuAGcCGG--CCGGC-CGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 17490 | 0.67 | 0.74737 |
Target: 5'- gCGUUUgCgAUC-GCCGacGCCGGCCGa -3' miRNA: 3'- gGCAAAgGgUAGcCGGC--CGGCCGGCg -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 122667 | 0.67 | 0.75637 |
Target: 5'- gCGg--CgCAggccCGGCUGuGCCGGUCGCg -3' miRNA: 3'- gGCaaaGgGUa---GCCGGC-CGGCCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 123250 | 0.67 | 0.75637 |
Target: 5'- cCUGUgccacUUUCGcCGGCUGGuCCGGgCCGCg -3' miRNA: 3'- -GGCAa----AGGGUaGCCGGCC-GGCC-GGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 51372 | 0.67 | 0.75637 |
Target: 5'- gCCGc--CCCGUcCGGCCGGCgacaGG-CGCc -3' miRNA: 3'- -GGCaaaGGGUA-GCCGGCCGg---CCgGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 81317 | 0.67 | 0.75637 |
Target: 5'- ----cUCCCGUCGGCCaaGCCGcgguacgcuccGCCGUc -3' miRNA: 3'- ggcaaAGGGUAGCCGGc-CGGC-----------CGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 138740 | 0.67 | 0.755474 |
Target: 5'- aCGgggUCCC--CGGCCcuccgggGGCCGaGUCGCg -3' miRNA: 3'- gGCaa-AGGGuaGCCGG-------CCGGC-CGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 111249 | 0.67 | 0.75637 |
Target: 5'- aCUGUagCaCC-UCGGCCGGCaggaugCGGaCCGCc -3' miRNA: 3'- -GGCAaaG-GGuAGCCGGCCG------GCC-GGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 176592 | 0.67 | 0.74737 |
Target: 5'- aUGUgaCUCAcggagagCGGCCGGCaCGGCCa- -3' miRNA: 3'- gGCAaaGGGUa------GCCGGCCG-GCCGGcg -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 182072 | 0.67 | 0.74737 |
Target: 5'- cCUGcgUCCgGUCGGCCaccGCCaGCCaGCg -3' miRNA: 3'- -GGCaaAGGgUAGCCGGc--CGGcCGG-CG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 84170 | 0.67 | 0.74737 |
Target: 5'- cUCGg--CCCAgcgcUCGGcCCGGCgcuCGGcCCGCc -3' miRNA: 3'- -GGCaaaGGGU----AGCC-GGCCG---GCC-GGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 68925 | 0.67 | 0.74737 |
Target: 5'- gCGgcgUCCuCGUC-GCCcGCgGGCCGCg -3' miRNA: 3'- gGCaa-AGG-GUAGcCGGcCGgCCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 43031 | 0.67 | 0.738282 |
Target: 5'- gUCGgccUCCAUCgcgcggcaGGCCGaGCCGGCCa- -3' miRNA: 3'- -GGCaaaGGGUAG--------CCGGC-CGGCCGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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