miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 22933 0.82 0.115127
Target:  5'- aCCGgcaCCCAUCGGCUGGCCgacgGGCCGg -3'
miRNA:   3'- -GGCaaaGGGUAGCCGGCCGG----CCGGCg -5'
11104 3' -61.1 NC_002794.1 + 51200 0.81 0.13004
Target:  5'- cUCGUUcgcucgCCCGcggagCGGCCGGCCGGCCGa -3'
miRNA:   3'- -GGCAAa-----GGGUa----GCCGGCCGGCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 32297 0.8 0.150282
Target:  5'- gCCGccgCCgCggCGGCCGcGCCGGCCGCg -3'
miRNA:   3'- -GGCaaaGG-GuaGCCGGC-CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 89823 0.79 0.173348
Target:  5'- -gGUgcgUCCUggggaacgaGUCGGUCGGCCGGCCGUc -3'
miRNA:   3'- ggCAa--AGGG---------UAGCCGGCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 188350 0.79 0.173348
Target:  5'- gCCGUcgcgCCCGUcCGGCCGGCggCGGCCGa -3'
miRNA:   3'- -GGCAaa--GGGUA-GCCGGCCG--GCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 137138 0.79 0.181714
Target:  5'- uCCGUccgCCCGccCGGCCGGCCgcccucggucccGGCCGCu -3'
miRNA:   3'- -GGCAaa-GGGUa-GCCGGCCGG------------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 63405 0.78 0.207538
Target:  5'- cCCGUUUCCCGaCGGCCGgacggacgaugagcGCCcgacaccaccacGGCCGCg -3'
miRNA:   3'- -GGCAAAGGGUaGCCGGC--------------CGG------------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 76453 0.77 0.245181
Target:  5'- cCCGUggcgCCCgccccuccaccGUCcGCCGGcCCGGCCGCa -3'
miRNA:   3'- -GGCAaa--GGG-----------UAGcCGGCC-GGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 189562 0.77 0.229066
Target:  5'- gCGg-UCCCGcUCGGUCGGCCGGCC-Cg -3'
miRNA:   3'- gGCaaAGGGU-AGCCGGCCGGCCGGcG- -5'
11104 3' -61.1 NC_002794.1 + 81992 0.76 0.286435
Target:  5'- aCCGUUgCCCGUCGa-CGacGCCGGCCGCu -3'
miRNA:   3'- -GGCAAaGGGUAGCcgGC--CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 75269 0.76 0.268118
Target:  5'- cCCGgcuccaccgCCCAccCGGCCGGCCGGCgccuCGCc -3'
miRNA:   3'- -GGCaaa------GGGUa-GCCGGCCGGCCG----GCG- -5'
11104 3' -61.1 NC_002794.1 + 68460 0.76 0.28895
Target:  5'- cCCGUUUCUucacggcgCAguggggcacggaggCGGCCGaGCCGGCCGUg -3'
miRNA:   3'- -GGCAAAGG--------GUa-------------GCCGGC-CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 80451 0.75 0.325992
Target:  5'- gCCGg--CCCGUCGG-CGGCCcGCUGCc -3'
miRNA:   3'- -GGCaaaGGGUAGCCgGCCGGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 190016 0.75 0.305723
Target:  5'- uCCGgg-UCCAUCGG-CGGCCGGUagCGCa -3'
miRNA:   3'- -GGCaaaGGGUAGCCgGCCGGCCG--GCG- -5'
11104 3' -61.1 NC_002794.1 + 66841 0.75 0.292756
Target:  5'- uCCGggcgcCgCCGUCGGCgCGGCgaGGCCGCg -3'
miRNA:   3'- -GGCaaa--G-GGUAGCCG-GCCGg-CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 58049 0.74 0.369464
Target:  5'- cCCGUc-CCCGUCGG-CGGCCccGGCgGCg -3'
miRNA:   3'- -GGCAaaGGGUAGCCgGCCGG--CCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 78666 0.74 0.347242
Target:  5'- uCUGgcacUCCAccUCGGCC-GCCGGCCGCa -3'
miRNA:   3'- -GGCaaa-GGGU--AGCCGGcCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 187572 0.74 0.354542
Target:  5'- cCCGUaccCgCCGUCGGCgCGGCCGccGUCGCg -3'
miRNA:   3'- -GGCAaa-G-GGUAGCCG-GCCGGC--CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 193643 0.74 0.354542
Target:  5'- uUCGUUUCCC--CGGUCGGCucCGGCgCGCc -3'
miRNA:   3'- -GGCAAAGGGuaGCCGGCCG--GCCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 118663 0.74 0.34005
Target:  5'- uCCGUgggcgcgacgCCCG-CGGCCGccGCCGGCgGCa -3'
miRNA:   3'- -GGCAaa--------GGGUaGCCGGC--CGGCCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.