miRNA display CGI


Results 21 - 40 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 58049 0.74 0.369464
Target:  5'- cCCGUc-CCCGUCGG-CGGCCccGGCgGCg -3'
miRNA:   3'- -GGCAaaGGGUAGCCgGCCGG--CCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 187211 0.74 0.369464
Target:  5'- cCCGaccaUCuCCAgCGGCucCGGCUGGCCGCa -3'
miRNA:   3'- -GGCaa--AG-GGUaGCCG--GCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 34073 0.73 0.377085
Target:  5'- gCCG-UUCCCGccggCGGCCGGgCaGCCGUc -3'
miRNA:   3'- -GGCaAAGGGUa---GCCGGCCgGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 181527 0.73 0.377085
Target:  5'- uCCGUUcgCCCGccgcCGGCgGGCCGG-CGCu -3'
miRNA:   3'- -GGCAAa-GGGUa---GCCGgCCGGCCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 186024 0.73 0.377085
Target:  5'- cCCGgg-CCCGgaccCGGgccCCGGCUGGCCGUc -3'
miRNA:   3'- -GGCaaaGGGUa---GCC---GGCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 70054 0.73 0.400573
Target:  5'- -gGUcgCCCgGUCGGgCGGCCGcaGCCGCa -3'
miRNA:   3'- ggCAaaGGG-UAGCCgGCCGGC--CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 105753 0.73 0.400573
Target:  5'- gCCGUcgUCgCCGUUcaucggGGUCGGUgGGCCGCg -3'
miRNA:   3'- -GGCAa-AG-GGUAG------CCGGCCGgCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 21852 0.73 0.400573
Target:  5'- cCCGaucgcCCCAUugaaCGGUCcgcgaGGCCGGCCGCg -3'
miRNA:   3'- -GGCaaa--GGGUA----GCCGG-----CCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 180882 0.73 0.408607
Target:  5'- uCCGgcgcgCCCGgucUCGGCCGcGgacUCGGCCGCg -3'
miRNA:   3'- -GGCaaa--GGGU---AGCCGGC-C---GGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 143815 0.73 0.408607
Target:  5'- gCCGUcggUUCCCAUggcgagCGGCCGGuccgacgccuCCGGCCagGCg -3'
miRNA:   3'- -GGCA---AAGGGUA------GCCGGCC----------GGCCGG--CG- -5'
11104 3' -61.1 NC_002794.1 + 70220 0.73 0.408607
Target:  5'- cCCGgacggUCgGgCGGgCGGCCGGCCGCc -3'
miRNA:   3'- -GGCaaa--GGgUaGCCgGCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 195621 0.73 0.408607
Target:  5'- uCCGg--CCCAaaCGGCCGGCgacgaCGaGCCGCa -3'
miRNA:   3'- -GGCaaaGGGUa-GCCGGCCG-----GC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 13798 0.73 0.416741
Target:  5'- gCCGUcUUCgCGaCGGgcCCGGCCGGCgGCg -3'
miRNA:   3'- -GGCA-AAGgGUaGCC--GGCCGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 13726 0.73 0.416741
Target:  5'- aCCGUgcggaCCCAcacgcuccCGGCCGGCCGacaccagacucGCCGCc -3'
miRNA:   3'- -GGCAaa---GGGUa-------GCCGGCCGGC-----------CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 114331 0.72 0.432464
Target:  5'- cUCGUagUCCCGccgcagCGGCUcguccgccgccagGGCCGGCUGCa -3'
miRNA:   3'- -GGCAa-AGGGUa-----GCCGG-------------CCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 54848 0.72 0.433301
Target:  5'- cCCaacgCCCGUaGGCCGGCgCGGgCCGCc -3'
miRNA:   3'- -GGcaaaGGGUAgCCGGCCG-GCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 147511 0.72 0.433301
Target:  5'- aCCGagUUCC-UCGGCCuggGGCUGGuCCGCu -3'
miRNA:   3'- -GGCaaAGGGuAGCCGG---CCGGCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 29202 0.72 0.441723
Target:  5'- uCCGUccgUCCggCGGUCGGCggccguCGGCCGCc -3'
miRNA:   3'- -GGCAaa-GGGuaGCCGGCCG------GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 49394 0.72 0.450238
Target:  5'- gCCGccg-CCGUCGGCCacGG-CGGCCGCg -3'
miRNA:   3'- -GGCaaagGGUAGCCGG--CCgGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 150788 0.72 0.457114
Target:  5'- cUCGUgcgacuccaggCCCcgCGGCggaCGGCCGaGCCGCu -3'
miRNA:   3'- -GGCAaa---------GGGuaGCCG---GCCGGC-CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.