miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 131017 0.72 0.458841
Target:  5'- aCGggUCgguggUCGUgCGGCgCGGCCGGCUGCc -3'
miRNA:   3'- gGCaaAG-----GGUA-GCCG-GCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 32816 0.72 0.467532
Target:  5'- aCCGUcgUCuUCGUCGGCCucgcGGCCGGCUc- -3'
miRNA:   3'- -GGCAa-AG-GGUAGCCGG----CCGGCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 181390 0.72 0.467532
Target:  5'- gCCGUcaguucgCCCG--GGCCGGCCG-CCGCc -3'
miRNA:   3'- -GGCAaa-----GGGUagCCGGCCGGCcGGCG- -5'
11104 3' -61.1 NC_002794.1 + 76515 0.72 0.476307
Target:  5'- cCCGac-CCCGUCccaGGCCa-CCGGCCGCg -3'
miRNA:   3'- -GGCaaaGGGUAG---CCGGccGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 141619 0.72 0.476307
Target:  5'- aCCGgcUCgCgGUCuagcgacgggaaGGCCGGCgUGGCCGCg -3'
miRNA:   3'- -GGCaaAG-GgUAG------------CCGGCCG-GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 185914 0.71 0.488727
Target:  5'- aCCGgg-CCCcUCGccaccGCCGGCCacccgccaggcucgcGGCCGCg -3'
miRNA:   3'- -GGCaaaGGGuAGC-----CGGCCGG---------------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 79018 0.71 0.494096
Target:  5'- ----aUCCCGcccUCGGCCgccuucugccGGcCCGGCCGCu -3'
miRNA:   3'- ggcaaAGGGU---AGCCGG----------CC-GGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 124245 0.71 0.494096
Target:  5'- cCUG-UUCCCcgCGcgcggguagucGCCGGCCaGCCGCc -3'
miRNA:   3'- -GGCaAAGGGuaGC-----------CGGCCGGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 58124 0.71 0.494096
Target:  5'- aCCGagcCCCugggCGGCCuGGCCcGCCGCc -3'
miRNA:   3'- -GGCaaaGGGua--GCCGG-CCGGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 116900 0.71 0.494096
Target:  5'- gCCGUcUCCgG-CGGCCGGuCCGGCgucgGCu -3'
miRNA:   3'- -GGCAaAGGgUaGCCGGCC-GGCCGg---CG- -5'
11104 3' -61.1 NC_002794.1 + 156393 0.71 0.494096
Target:  5'- ----cUUCUAgagCGGCCGGCgccgCGGCCGCg -3'
miRNA:   3'- ggcaaAGGGUa--GCCGGCCG----GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 186292 0.71 0.503104
Target:  5'- aCCGcggCCaggCGGCCGGUCG-CCGCg -3'
miRNA:   3'- -GGCaaaGGguaGCCGGCCGGCcGGCG- -5'
11104 3' -61.1 NC_002794.1 + 130651 0.71 0.503104
Target:  5'- cCCGccgCCCcgCcGCCGGCCGcgggcuccGCCGCg -3'
miRNA:   3'- -GGCaaaGGGuaGcCGGCCGGC--------CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 123002 0.71 0.503104
Target:  5'- gCCGUg-CUgAcgGGCCGGCUGGCCGUc -3'
miRNA:   3'- -GGCAaaGGgUagCCGGCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 75367 0.71 0.503104
Target:  5'- aCCGa--CCCGccgCGGCCGGCggCGGCgGCc -3'
miRNA:   3'- -GGCaaaGGGUa--GCCGGCCG--GCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 110255 0.71 0.52041
Target:  5'- -gGUUUCCCGcgCGGCgucgcgaCGG-CGGCCGCc -3'
miRNA:   3'- ggCAAAGGGUa-GCCG-------GCCgGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 127572 0.71 0.521328
Target:  5'- gCGUUuaCCGUgGGCaCGGCuuucacucugcgCGGCCGCu -3'
miRNA:   3'- gGCAAagGGUAgCCG-GCCG------------GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 69041 0.71 0.529612
Target:  5'- gCCGgcUUCCUcgCuccgcucgccacgGGCCGccGCCGGCCGCc -3'
miRNA:   3'- -GGCa-AAGGGuaG-------------CCGGC--CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 154340 0.71 0.529612
Target:  5'- cCCGggUgCCG-CGGCCGaGCUcccgcgcgguccaGGCCGCg -3'
miRNA:   3'- -GGCaaAgGGUaGCCGGC-CGG-------------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 82561 0.7 0.539803
Target:  5'- gCCGg--CCCAgcCGGCgaGGCCGacGCCGCc -3'
miRNA:   3'- -GGCaaaGGGUa-GCCGg-CCGGC--CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.