miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 52914 0.7 0.539803
Target:  5'- gCCGUcgCcgccgCCGUCGcUCGGCCGGCaCGCg -3'
miRNA:   3'- -GGCAaaG-----GGUAGCcGGCCGGCCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 82561 0.7 0.539803
Target:  5'- gCCGg--CCCAgcCGGCgaGGCCGacGCCGCc -3'
miRNA:   3'- -GGCaaaGGGUa-GCCGg-CCGGC--CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 44402 0.7 0.549124
Target:  5'- cCCG-UUCCgGUCuGaCCGGCCGGCgccgaGCg -3'
miRNA:   3'- -GGCaAAGGgUAGcC-GGCCGGCCGg----CG- -5'
11104 3' -61.1 NC_002794.1 + 31321 0.7 0.549124
Target:  5'- gCGUgagUCUCGUCGGCuCGGCgcccGCCGUg -3'
miRNA:   3'- gGCAa--AGGGUAGCCG-GCCGgc--CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 71129 0.7 0.549124
Target:  5'- cUCGUUcaUCuCCGUCaGCgGGCUGuGCCGCc -3'
miRNA:   3'- -GGCAA--AG-GGUAGcCGgCCGGC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 89569 0.7 0.549124
Target:  5'- gCCGagcgUCCCGgugucaUCGGCC-GUCGaGCCGCg -3'
miRNA:   3'- -GGCaa--AGGGU------AGCCGGcCGGC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 105486 0.7 0.557555
Target:  5'- gUCGUcUCCgGUCGuggagccGCCGccGCCGGUCGCg -3'
miRNA:   3'- -GGCAaAGGgUAGC-------CGGC--CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 180274 0.7 0.558494
Target:  5'- gCCGgucUCCUcgCGGcCCGcGCCG-CCGCa -3'
miRNA:   3'- -GGCaa-AGGGuaGCC-GGC-CGGCcGGCG- -5'
11104 3' -61.1 NC_002794.1 + 69736 0.7 0.56791
Target:  5'- gCCGgagCgCCA-CGGCCGGCgacGCCGCg -3'
miRNA:   3'- -GGCaaaG-GGUaGCCGGCCGgc-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 100753 0.7 0.56791
Target:  5'- gCGcg-UCUAUC-GCUGGCCGGUCGCg -3'
miRNA:   3'- gGCaaaGGGUAGcCGGCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 34782 0.7 0.56791
Target:  5'- cCCGcg-CCagccgaGUCGGCCgaaccGGCCcgGGCCGCg -3'
miRNA:   3'- -GGCaaaGGg-----UAGCCGG-----CCGG--CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 63149 0.7 0.56791
Target:  5'- gCGUgcacUCCCAgcugCuGCaCGGCCgaGGCCGCg -3'
miRNA:   3'- gGCAa---AGGGUa---GcCG-GCCGG--CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 185752 0.7 0.56791
Target:  5'- aCGcgUCCag-CcGCCGGCgCGGCCGCc -3'
miRNA:   3'- gGCaaAGGguaGcCGGCCG-GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 187054 0.7 0.56791
Target:  5'- cCCGgagCCCG-CGGCCcGCCagguGCCGCa -3'
miRNA:   3'- -GGCaaaGGGUaGCCGGcCGGc---CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 119494 0.7 0.576417
Target:  5'- gCUGcgUCCUcggggucGUCGGCgGcgcggaGCCGGCCGCg -3'
miRNA:   3'- -GGCaaAGGG-------UAGCCGgC------CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 44242 0.7 0.577364
Target:  5'- gCCGggcggCUCGgugcCGGgCGGCuCGGCCGCc -3'
miRNA:   3'- -GGCaaa--GGGUa---GCCgGCCG-GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 149203 0.7 0.577364
Target:  5'- aCGUgagCUAUcCGGCUGGCCGGaaGCg -3'
miRNA:   3'- gGCAaagGGUA-GCCGGCCGGCCggCG- -5'
11104 3' -61.1 NC_002794.1 + 34963 0.7 0.577364
Target:  5'- cCCGcgccUCCCGUCccuGGCCacgaaacuGcGCCGGCUGCg -3'
miRNA:   3'- -GGCaa--AGGGUAG---CCGG--------C-CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 66895 0.7 0.577364
Target:  5'- gCCGacUCCCGUuccCGGUCcuCCGGCCGCc -3'
miRNA:   3'- -GGCaaAGGGUA---GCCGGccGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 111604 0.7 0.586853
Target:  5'- -gGUgaucUCCCA--GGCCGGCgGGgCCGCc -3'
miRNA:   3'- ggCAa---AGGGUagCCGGCCGgCC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.