miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 34717 0.7 0.586853
Target:  5'- gCCGgcgCCacgaGGCgCGGgCGGCCGCa -3'
miRNA:   3'- -GGCaaaGGguagCCG-GCCgGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 111604 0.7 0.586853
Target:  5'- -gGUgaucUCCCA--GGCCGGCgGGgCCGCc -3'
miRNA:   3'- ggCAa---AGGGUagCCGGCCGgCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 47949 0.7 0.586853
Target:  5'- gCCGcgcgUCCCGgcgcCGGCUGGgCGaccGCCGCg -3'
miRNA:   3'- -GGCaa--AGGGUa---GCCGGCCgGC---CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 41226 0.69 0.59637
Target:  5'- uCCGgggauuccUCCCAcgccgCGGCCGccgacGCCGGCgGCc -3'
miRNA:   3'- -GGCaa------AGGGUa----GCCGGC-----CGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 48538 0.69 0.59637
Target:  5'- -aGgcUCggGUCGGCCGaccacuccGCCGGCCGCc -3'
miRNA:   3'- ggCaaAGggUAGCCGGC--------CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 193421 0.69 0.59637
Target:  5'- gCCGccgCCCGUCGuccaGCCGuCCGGCaCGCc -3'
miRNA:   3'- -GGCaaaGGGUAGC----CGGCcGGCCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 187695 0.69 0.59637
Target:  5'- gCGg--CCCGUUGGCCGuCUccgucacgGGCCGCa -3'
miRNA:   3'- gGCaaaGGGUAGCCGGCcGG--------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 112305 0.69 0.603047
Target:  5'- cCCGggUCCgacuucggcgccgaCGgcggggagCGcGCCGGCCGGCgGCg -3'
miRNA:   3'- -GGCaaAGG--------------GUa-------GC-CGGCCGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 108294 0.69 0.604956
Target:  5'- cCCGguaucugaUCCCGUUGcGCCGGCggugggucuuggaCGGCgGCg -3'
miRNA:   3'- -GGCaa------AGGGUAGC-CGGCCG-------------GCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 126044 0.69 0.605911
Target:  5'- uUCGg--CCUggCGGUCGGaCUGGUCGCg -3'
miRNA:   3'- -GGCaaaGGGuaGCCGGCC-GGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 22891 0.69 0.605911
Target:  5'- cCUGgccUCCCGUUGGUggaCGGCggcgaccgCGGCCGCc -3'
miRNA:   3'- -GGCaa-AGGGUAGCCG---GCCG--------GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 110353 0.69 0.605911
Target:  5'- gCCGUggcgacgCCuCGUCGucGUCGGCucuCGGCCGCu -3'
miRNA:   3'- -GGCAaa-----GG-GUAGC--CGGCCG---GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 90486 0.69 0.605911
Target:  5'- gCCGccgUCCCGcgcgaUCGGCCGucCCcGCCGCg -3'
miRNA:   3'- -GGCaa-AGGGU-----AGCCGGCc-GGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 117205 0.69 0.605911
Target:  5'- gUCGgg-CCCGggCGGCU--CCGGCCGCg -3'
miRNA:   3'- -GGCaaaGGGUa-GCCGGccGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 92715 0.69 0.615468
Target:  5'- aCCGUgucgagCCUGUCGcGCUGGCU-GCUGCa -3'
miRNA:   3'- -GGCAaa----GGGUAGC-CGGCCGGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 117359 0.69 0.615468
Target:  5'- ----aUCUCGUUGGagCGGCgGGCCGCc -3'
miRNA:   3'- ggcaaAGGGUAGCCg-GCCGgCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 146996 0.69 0.615468
Target:  5'- gCCGg--CCgaCGUCGGCgGcGgCGGCCGCc -3'
miRNA:   3'- -GGCaaaGG--GUAGCCGgC-CgGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 38445 0.69 0.615468
Target:  5'- gCCGga--CUGagGaGCCGGCgCGGCCGCg -3'
miRNA:   3'- -GGCaaagGGUagC-CGGCCG-GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 181726 0.69 0.621209
Target:  5'- cCCGUcUCgCGgaacacgcgcgagCGGCCGGCCaGcCCGCu -3'
miRNA:   3'- -GGCAaAGgGUa------------GCCGGCCGGcC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 44676 0.69 0.625037
Target:  5'- uCCGcagCgCCAUCGuccagacccaccGCCGcCCGGCCGCg -3'
miRNA:   3'- -GGCaaaG-GGUAGC------------CGGCcGGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.