Results 1 - 20 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11104 | 3' | -61.1 | NC_002794.1 | + | 140288 | 0.66 | 0.808093 |
Target: 5'- gCGUUUuugggCCUcUCGGCCaaggccuGCCGGCgGCu -3' miRNA: 3'- gGCAAA-----GGGuAGCCGGc------CGGCCGgCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 119532 | 0.66 | 0.808093 |
Target: 5'- nCGgacCCCucguccgCGGCCGucGCCGGCCa- -3' miRNA: 3'- gGCaaaGGGua-----GCCGGC--CGGCCGGcg -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 86703 | 0.66 | 0.808093 |
Target: 5'- cCCGgucgCUCGUCGaaGCCGcCCGGCCa- -3' miRNA: 3'- -GGCaaa-GGGUAGC--CGGCcGGCCGGcg -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 18807 | 0.66 | 0.808093 |
Target: 5'- gCCGg--CCaacggGUCGGCgaccuCGGCCGG-CGCg -3' miRNA: 3'- -GGCaaaGGg----UAGCCG-----GCCGGCCgGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 81113 | 0.66 | 0.803121 |
Target: 5'- aCUGUUUCgaCGUCGGCaucuaucaccaCGGCCGCu -3' miRNA: 3'- -GGCAAAGg-GUAGCCGgccg-------GCCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 114198 | 0.66 | 0.79978 |
Target: 5'- gCGg--CgCCA-CGGCCGGCgucucCGGCgGCa -3' miRNA: 3'- gGCaaaG-GGUaGCCGGCCG-----GCCGgCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 96744 | 0.66 | 0.79978 |
Target: 5'- gCCGgcgcgUCUCGcaagCGGCCGGC-GGUCGa -3' miRNA: 3'- -GGCaa---AGGGUa---GCCGGCCGgCCGGCg -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 90412 | 0.66 | 0.79978 |
Target: 5'- aCGUgag-CAUCGGCCGuCCcgaguGGCCGCu -3' miRNA: 3'- gGCAaaggGUAGCCGGCcGG-----CCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 14990 | 0.66 | 0.79978 |
Target: 5'- cCCGgcagcagcUCCUcgggCGGUcuCGGCUGGCUGCu -3' miRNA: 3'- -GGCaa------AGGGua--GCCG--GCCGGCCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 19363 | 0.66 | 0.79978 |
Target: 5'- cCCGccccgCCCGgaUCgGGCgGGCCGGUCa- -3' miRNA: 3'- -GGCaaa--GGGU--AG-CCGgCCGGCCGGcg -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 46978 | 0.66 | 0.79978 |
Target: 5'- aCCGUgUUCCuCGUCccccGCCGGCaCGGCaagaCGUg -3' miRNA: 3'- -GGCA-AAGG-GUAGc---CGGCCG-GCCG----GCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 37259 | 0.66 | 0.79978 |
Target: 5'- cUCGcucUCCGUCGGCgGGCgcgCGGgCGCg -3' miRNA: 3'- -GGCaaaGGGUAGCCGgCCG---GCCgGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 89911 | 0.66 | 0.79978 |
Target: 5'- aUCGg--CCCGUUGGCgcuagaGGCgCGGgCGCc -3' miRNA: 3'- -GGCaaaGGGUAGCCGg-----CCG-GCCgGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 112554 | 0.66 | 0.79978 |
Target: 5'- gCGgggcUCgCCGcCGGCCacCCGGCCGCu -3' miRNA: 3'- gGCaa--AG-GGUaGCCGGccGGCCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 124822 | 0.66 | 0.79978 |
Target: 5'- aCGUgcgaCCUGUCGGCgaccaucugcaUGG-CGGCCGCc -3' miRNA: 3'- gGCAaa--GGGUAGCCG-----------GCCgGCCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 128019 | 0.66 | 0.798941 |
Target: 5'- gCCGc--CCCGUCGGCUGacaccccGCgGGCCa- -3' miRNA: 3'- -GGCaaaGGGUAGCCGGC-------CGgCCGGcg -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 33430 | 0.66 | 0.79726 |
Target: 5'- cUCGggcuggUCCCGgugcaggaccUCGGgCGGCCGccggacgcgcccacGCCGCu -3' miRNA: 3'- -GGCaa----AGGGU----------AGCCgGCCGGC--------------CGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 14548 | 0.66 | 0.794728 |
Target: 5'- cUCGcc-CCCGUCGacgcgcgggaggcgaGCCGGCCgaccgaagcgGGCCGUg -3' miRNA: 3'- -GGCaaaGGGUAGC---------------CGGCCGG----------CCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 148566 | 0.66 | 0.792185 |
Target: 5'- --cUUUCUgcUCGGacugaucugcgagcaCGGCCGGCCGCc -3' miRNA: 3'- ggcAAAGGguAGCCg--------------GCCGGCCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 102470 | 0.66 | 0.791334 |
Target: 5'- gCGg--CgCGUCGG-CGuGCCGGCCGg -3' miRNA: 3'- gGCaaaGgGUAGCCgGC-CGGCCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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