Results 21 - 40 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11104 | 3' | -61.1 | NC_002794.1 | + | 109495 | 0.66 | 0.791334 |
Target: 5'- aCGUUUCgugaugaCGUUGGuCCGcCCGGcCCGCg -3' miRNA: 3'- gGCAAAGg------GUAGCC-GGCcGGCC-GGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 84967 | 0.66 | 0.791334 |
Target: 5'- gCGgaUCCU--UGGCC--CCGGCCGCg -3' miRNA: 3'- gGCaaAGGGuaGCCGGccGGCCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 125313 | 0.66 | 0.791334 |
Target: 5'- gCCGUUcgCCCG-C-GCCGaGCCGGagCGCg -3' miRNA: 3'- -GGCAAa-GGGUaGcCGGC-CGGCCg-GCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 43493 | 0.66 | 0.791334 |
Target: 5'- gCGgaUCCCcUCcGCCaGGCCGGUgaaagCGCg -3' miRNA: 3'- gGCaaAGGGuAGcCGG-CCGGCCG-----GCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 193912 | 0.66 | 0.791334 |
Target: 5'- cUCGUccucUCCCAcuucuUCGGCCaccGCCGGCUccgGCc -3' miRNA: 3'- -GGCAa---AGGGU-----AGCCGGc--CGGCCGG---CG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 123443 | 0.66 | 0.791334 |
Target: 5'- aCCGUcgCCgAgCGGCUGGCCGaGCa-- -3' miRNA: 3'- -GGCAaaGGgUaGCCGGCCGGC-CGgcg -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 102470 | 0.66 | 0.791334 |
Target: 5'- gCGg--CgCGUCGG-CGuGCCGGCCGg -3' miRNA: 3'- gGCaaaGgGUAGCCgGC-CGGCCGGCg -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 114734 | 0.66 | 0.791334 |
Target: 5'- uCCGgg-UUCGUCGaGCCGGC--GCCGCc -3' miRNA: 3'- -GGCaaaGGGUAGC-CGGCCGgcCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 95847 | 0.66 | 0.791334 |
Target: 5'- gCGg--CCgGggaggCGGCgGGCgGGCCGUu -3' miRNA: 3'- gGCaaaGGgUa----GCCGgCCGgCCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 71840 | 0.66 | 0.790483 |
Target: 5'- gCCGUc-CCCGUCGacgggaccucaccGCCGGCCaGacuCCGCu -3' miRNA: 3'- -GGCAaaGGGUAGC-------------CGGCCGGcC---GGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 82690 | 0.66 | 0.782763 |
Target: 5'- gCCGUUcgCCCggCGcGCCGagacgcGCCGaggacGCCGCg -3' miRNA: 3'- -GGCAAa-GGGuaGC-CGGC------CGGC-----CGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 82062 | 0.66 | 0.782763 |
Target: 5'- gCGUcgUCC-UCGGCCucGCCGGCCc- -3' miRNA: 3'- gGCAaaGGGuAGCCGGc-CGGCCGGcg -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 99933 | 0.66 | 0.782763 |
Target: 5'- gCGUggUCUUG-CGGCuguuCGGCCGGaCCGCc -3' miRNA: 3'- gGCAa-AGGGUaGCCG----GCCGGCC-GGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 47743 | 0.66 | 0.782763 |
Target: 5'- gCCGggUCCacgUGG-CGGCCguGGUCGCg -3' miRNA: 3'- -GGCaaAGGguaGCCgGCCGG--CCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 185265 | 0.66 | 0.782763 |
Target: 5'- gCGgacgCCGcCGGCCGaGUgGGCCGCc -3' miRNA: 3'- gGCaaagGGUaGCCGGC-CGgCCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 17915 | 0.66 | 0.782763 |
Target: 5'- uCCGgcagcUCaCCAcCGGCCGGCUccccgaccuGGCgGCc -3' miRNA: 3'- -GGCaa---AG-GGUaGCCGGCCGG---------CCGgCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 14937 | 0.66 | 0.782763 |
Target: 5'- aCGUgcUCUCgAUCGGCUcGCCcGCCGCc -3' miRNA: 3'- gGCAa-AGGG-UAGCCGGcCGGcCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 22547 | 0.66 | 0.782763 |
Target: 5'- uCCGga--CCGUCcGCCaccgccgacacGGCaCGGCCGCu -3' miRNA: 3'- -GGCaaagGGUAGcCGG-----------CCG-GCCGGCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 72449 | 0.66 | 0.782763 |
Target: 5'- aCCGgcggcgCCCcgCGcCCGGCCccgcGGCgGCg -3' miRNA: 3'- -GGCaaa---GGGuaGCcGGCCGG----CCGgCG- -5' |
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11104 | 3' | -61.1 | NC_002794.1 | + | 192428 | 0.66 | 0.782763 |
Target: 5'- aCGggUCCg--CGGCCGGC-GcGUCGCg -3' miRNA: 3'- gGCaaAGGguaGCCGGCCGgC-CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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