miRNA display CGI


Results 41 - 60 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 40706 0.66 0.7819
Target:  5'- uCCGUcaacacggugaagUUCUUcuguagAUCGaUCGGCUGGCCGCa -3'
miRNA:   3'- -GGCA-------------AAGGG------UAGCcGGCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 102851 0.66 0.777564
Target:  5'- gUGUUUCCCcgCGGCguggugcgccgggauCGGUuucUGGCCGa -3'
miRNA:   3'- gGCAAAGGGuaGCCG---------------GCCG---GCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 38591 0.66 0.774074
Target:  5'- gCCGccuccUCCCGgacgagaGGCCGGaCGGgCGCg -3'
miRNA:   3'- -GGCaa---AGGGUag-----CCGGCCgGCCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 149969 0.66 0.774074
Target:  5'- gCCGaccUgCCG-CGGaCCGG-CGGCCGCu -3'
miRNA:   3'- -GGCaa-AgGGUaGCC-GGCCgGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 67834 0.66 0.774074
Target:  5'- aCCGgccCgCCGUCGcCCGGCgCcGCCGCg -3'
miRNA:   3'- -GGCaaaG-GGUAGCcGGCCG-GcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 42179 0.66 0.774074
Target:  5'- uCCGUcUCCgCcacgAUCGGCCGaaacucgccgccGCCGGuCUGCc -3'
miRNA:   3'- -GGCAaAGG-G----UAGCCGGC------------CGGCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 17973 0.66 0.774074
Target:  5'- gCCGUgagccuggcgCCCA-CGGCC-GCCGGCgaGUa -3'
miRNA:   3'- -GGCAaa--------GGGUaGCCGGcCGGCCGg-CG- -5'
11104 3' -61.1 NC_002794.1 + 115183 0.66 0.774074
Target:  5'- aCGg--CCCGgugccggCGGUCGaGCCGGCguaGCg -3'
miRNA:   3'- gGCaaaGGGUa------GCCGGC-CGGCCGg--CG- -5'
11104 3' -61.1 NC_002794.1 + 189604 0.66 0.774074
Target:  5'- cCCGUccgCCCGagacccgccgacUCGGCCgacuggcuagcuGGCUGGCUGa -3'
miRNA:   3'- -GGCAaa-GGGU------------AGCCGG------------CCGGCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 130417 0.66 0.774074
Target:  5'- aCCaugUUCCaCAUCGGCCGuCUGGUCcagGCg -3'
miRNA:   3'- -GGca-AAGG-GUAGCCGGCcGGCCGG---CG- -5'
11104 3' -61.1 NC_002794.1 + 189884 0.66 0.774074
Target:  5'- aCCGg--CCCGcUCgGGCCcGCCGucagcgccGCCGCg -3'
miRNA:   3'- -GGCaaaGGGU-AG-CCGGcCGGC--------CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 186948 0.66 0.774074
Target:  5'- aCGg--CCCccgGGCC-GCUGGCCGCc -3'
miRNA:   3'- gGCaaaGGGuagCCGGcCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 123026 0.66 0.773199
Target:  5'- nUCGUgUUCCCcgacaacGUCGGCguguaCGGCCcGCUGCu -3'
miRNA:   3'- -GGCA-AAGGG-------UAGCCG-----GCCGGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 42056 0.66 0.773199
Target:  5'- gCGUg--CCAgaugaugUUGGCCGaCUGGCCGCg -3'
miRNA:   3'- gGCAaagGGU-------AGCCGGCcGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 27398 0.66 0.765274
Target:  5'- aCCGgaugaCCGcUCGaCCGGCCGcCCGCg -3'
miRNA:   3'- -GGCaaag-GGU-AGCcGGCCGGCcGGCG- -5'
11104 3' -61.1 NC_002794.1 + 19576 0.66 0.765274
Target:  5'- gCCGUcaCCCAgugccuccucCGGcCCGGCgagCGGCCGa -3'
miRNA:   3'- -GGCAaaGGGUa---------GCC-GGCCG---GCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 122667 0.67 0.75637
Target:  5'- gCGg--CgCAggccCGGCUGuGCCGGUCGCg -3'
miRNA:   3'- gGCaaaGgGUa---GCCGGC-CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 123250 0.67 0.75637
Target:  5'- cCUGUgccacUUUCGcCGGCUGGuCCGGgCCGCg -3'
miRNA:   3'- -GGCAa----AGGGUaGCCGGCC-GGCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 51372 0.67 0.75637
Target:  5'- gCCGc--CCCGUcCGGCCGGCgacaGG-CGCc -3'
miRNA:   3'- -GGCaaaGGGUA-GCCGGCCGg---CCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 81317 0.67 0.75637
Target:  5'- ----cUCCCGUCGGCCaaGCCGcgguacgcuccGCCGUc -3'
miRNA:   3'- ggcaaAGGGUAGCCGGc-CGGC-----------CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.