miRNA display CGI


Results 61 - 80 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 81317 0.67 0.75637
Target:  5'- ----cUCCCGUCGGCCaaGCCGcgguacgcuccGCCGUc -3'
miRNA:   3'- ggcaaAGGGUAGCCGGc-CGGC-----------CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 111249 0.67 0.75637
Target:  5'- aCUGUagCaCC-UCGGCCGGCaggaugCGGaCCGCc -3'
miRNA:   3'- -GGCAaaG-GGuAGCCGGCCG------GCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 138740 0.67 0.755474
Target:  5'- aCGgggUCCC--CGGCCcuccgggGGCCGaGUCGCg -3'
miRNA:   3'- gGCaa-AGGGuaGCCGG-------CCGGC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 102401 0.67 0.74737
Target:  5'- aCUGgucUUCCgCGacgCGGCCguGGCCgaGGCCGCc -3'
miRNA:   3'- -GGCa--AAGG-GUa--GCCGG--CCGG--CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 129796 0.67 0.74737
Target:  5'- gCCGgaaUUCgCUGUCGGaCCGcGUCuGCCGCa -3'
miRNA:   3'- -GGCa--AAG-GGUAGCC-GGC-CGGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 67537 0.67 0.74737
Target:  5'- uCCGgcuugagCCC-UCcGCCcgGGCCGcGCCGCa -3'
miRNA:   3'- -GGCaaa----GGGuAGcCGG--CCGGC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 17490 0.67 0.74737
Target:  5'- gCGUUUgCgAUC-GCCGacGCCGGCCGa -3'
miRNA:   3'- gGCAAAgGgUAGcCGGC--CGGCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 68925 0.67 0.74737
Target:  5'- gCGgcgUCCuCGUC-GCCcGCgGGCCGCg -3'
miRNA:   3'- gGCaa-AGG-GUAGcCGGcCGgCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 84170 0.67 0.74737
Target:  5'- cUCGg--CCCAgcgcUCGGcCCGGCgcuCGGcCCGCc -3'
miRNA:   3'- -GGCaaaGGGU----AGCC-GGCCG---GCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 182072 0.67 0.74737
Target:  5'- cCUGcgUCCgGUCGGCCaccGCCaGCCaGCg -3'
miRNA:   3'- -GGCaaAGGgUAGCCGGc--CGGcCGG-CG- -5'
11104 3' -61.1 NC_002794.1 + 176592 0.67 0.74737
Target:  5'- aUGUgaCUCAcggagagCGGCCGGCaCGGCCa- -3'
miRNA:   3'- gGCAaaGGGUa------GCCGGCCG-GCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 80474 0.67 0.746465
Target:  5'- cCCGUcUUCCgCGUCGaGCUGGCgcaccacCGGCaCGUc -3'
miRNA:   3'- -GGCA-AAGG-GUAGC-CGGCCG-------GCCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 135594 0.67 0.746465
Target:  5'- gCCGgggUCCGUCgGGUCGGaagcggaUCGGUCGCa -3'
miRNA:   3'- -GGCaaaGGGUAG-CCGGCC-------GGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 86174 0.67 0.741927
Target:  5'- aCCGgaugCCCcg-GGCCGaGCCgggacggaugcuccgGGCCGCg -3'
miRNA:   3'- -GGCaaa-GGGuagCCGGC-CGG---------------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 86534 0.67 0.741927
Target:  5'- aCCGgaugCCCcg-GGCCGaGCCgggacggaugcuccgGGCCGCg -3'
miRNA:   3'- -GGCaaa-GGGuagCCGGC-CGG---------------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 86366 0.67 0.741927
Target:  5'- aCCGgaugCCCcg-GGCCGaGCCgggacggaugcuccgGGCCGCg -3'
miRNA:   3'- -GGCaaa-GGGuagCCGGC-CGG---------------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 61153 0.67 0.741927
Target:  5'- cCCGac-CCCGagcgcgcgguccggaUCGG-CGGCUGGUCGCu -3'
miRNA:   3'- -GGCaaaGGGU---------------AGCCgGCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 82470 0.67 0.738282
Target:  5'- cUCGacg-CCGUCGGCCuccgcgacgcGGCCcGCCGCg -3'
miRNA:   3'- -GGCaaagGGUAGCCGG----------CCGGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 112094 0.67 0.738282
Target:  5'- cCCGUUgcgcgUCCAggcgCGGCCGGgacgaCGG-CGCg -3'
miRNA:   3'- -GGCAAa----GGGUa---GCCGGCCg----GCCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 43031 0.67 0.738282
Target:  5'- gUCGgccUCCAUCgcgcggcaGGCCGaGCCGGCCa- -3'
miRNA:   3'- -GGCaaaGGGUAG--------CCGGC-CGGCCGGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.