miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 112094 0.67 0.738282
Target:  5'- cCCGUUgcgcgUCCAggcgCGGCCGGgacgaCGG-CGCg -3'
miRNA:   3'- -GGCAAa----GGGUa---GCCGGCCg----GCCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 82470 0.67 0.738282
Target:  5'- cUCGacg-CCGUCGGCCuccgcgacgcGGCCcGCCGCg -3'
miRNA:   3'- -GGCaaagGGUAGCCGG----------CCGGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 61810 0.67 0.738282
Target:  5'- cCCGcucaUCuCCggCGGCC-GCCGGCgGCc -3'
miRNA:   3'- -GGCaa--AG-GGuaGCCGGcCGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 49587 0.67 0.737368
Target:  5'- aCCGgaUCCCGaucgcgaUCGGCgaCGGCgggcgcCGGCgGCg -3'
miRNA:   3'- -GGCaaAGGGU-------AGCCG--GCCG------GCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 21987 0.67 0.737368
Target:  5'- uCCGcgaCCCGUCGccggcaaGCCGGCCaaGGCgUGCg -3'
miRNA:   3'- -GGCaaaGGGUAGC-------CGGCCGG--CCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 185072 0.67 0.735539
Target:  5'- gCCGcggCCCGUC-GCCGuagcaggcguaccaGCCGGUCGUg -3'
miRNA:   3'- -GGCaaaGGGUAGcCGGC--------------CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 67012 0.67 0.729113
Target:  5'- aCGagUCCgGcggcggCGGCCGGCUcccGCCGCg -3'
miRNA:   3'- gGCaaAGGgUa-----GCCGGCCGGc--CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 102629 0.67 0.729113
Target:  5'- cCUGgcggUCAUCcGCCGGCUGGCgGCg -3'
miRNA:   3'- -GGCaaagGGUAGcCGGCCGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 683 0.67 0.729113
Target:  5'- cCUG-UUCUUcgCGGCCGGaguCGGCUGUu -3'
miRNA:   3'- -GGCaAAGGGuaGCCGGCCg--GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 78065 0.67 0.729113
Target:  5'- gCCGccgCCCGaacGCCGGCCG-CCGCc -3'
miRNA:   3'- -GGCaaaGGGUagcCGGCCGGCcGGCG- -5'
11104 3' -61.1 NC_002794.1 + 131370 0.67 0.729113
Target:  5'- aCCGcUUCgCCcgUGGUCGGC--GCCGCg -3'
miRNA:   3'- -GGCaAAG-GGuaGCCGGCCGgcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 183362 0.67 0.729113
Target:  5'- gCCGgacCCCAgguccCGGCCGugccccgucccGCCGaGCUGCa -3'
miRNA:   3'- -GGCaaaGGGUa----GCCGGC-----------CGGC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 186634 0.67 0.729113
Target:  5'- gCCGacacagCCCG-C-GCgGGUCGGCCGCg -3'
miRNA:   3'- -GGCaaa---GGGUaGcCGgCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 111661 0.67 0.729113
Target:  5'- nCGgccacgCCCGUCGGauaCGGUCguccaGGCCGUg -3'
miRNA:   3'- gGCaaa---GGGUAGCCg--GCCGG-----CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 188767 0.67 0.71987
Target:  5'- aCGUggaacagCCCGgugcagCGGUagCGGCCGGCCccGCc -3'
miRNA:   3'- gGCAaa-----GGGUa-----GCCG--GCCGGCCGG--CG- -5'
11104 3' -61.1 NC_002794.1 + 156534 0.67 0.71987
Target:  5'- -aGggUUCCGUCGcGUCGGCCguggauucGGCaCGCg -3'
miRNA:   3'- ggCaaAGGGUAGC-CGGCCGG--------CCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 48872 0.67 0.71987
Target:  5'- -----cCCCGUCGG-CGGCCaGGUgGCa -3'
miRNA:   3'- ggcaaaGGGUAGCCgGCCGG-CCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 53901 0.67 0.71987
Target:  5'- uCCGgcggcgUCCuCGUCGccGUCGGCgGcGCCGCc -3'
miRNA:   3'- -GGCaa----AGG-GUAGC--CGGCCGgC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 111076 0.67 0.71987
Target:  5'- gCGcuccCCCGUCGGCaggguCGGCgGGCCcgGCg -3'
miRNA:   3'- gGCaaa-GGGUAGCCG-----GCCGgCCGG--CG- -5'
11104 3' -61.1 NC_002794.1 + 141690 0.67 0.71987
Target:  5'- gCCGUacgcggUCCCGUCguGGCCGaaCCGGCguuCGCc -3'
miRNA:   3'- -GGCAa-----AGGGUAG--CCGGCc-GGCCG---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.