miRNA display CGI


Results 101 - 120 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 53901 0.67 0.71987
Target:  5'- uCCGgcggcgUCCuCGUCGccGUCGGCgGcGCCGCc -3'
miRNA:   3'- -GGCaa----AGG-GUAGC--CGGCCGgC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 111076 0.67 0.71987
Target:  5'- gCGcuccCCCGUCGGCaggguCGGCgGGCCcgGCg -3'
miRNA:   3'- gGCaaa-GGGUAGCCG-----GCCGgCCGG--CG- -5'
11104 3' -61.1 NC_002794.1 + 121353 0.67 0.71987
Target:  5'- aCCGggaagUUCgUCGaCGGCgucCGaGCCGGCCGCc -3'
miRNA:   3'- -GGCa----AAG-GGUaGCCG---GC-CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 122143 0.67 0.718942
Target:  5'- aCCGUUUCacgccggCCGUguccgacuaccUGGCCGaGCaCGGCgCGCg -3'
miRNA:   3'- -GGCAAAG-------GGUA-----------GCCGGC-CG-GCCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 150526 0.67 0.710562
Target:  5'- cUCGgc-CCCGUagccgGGCCGGCgccaUGGCCGUc -3'
miRNA:   3'- -GGCaaaGGGUAg----CCGGCCG----GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 121390 0.67 0.710562
Target:  5'- gCCGgga-CCG-CGGCCGGCgccgGGaCCGCg -3'
miRNA:   3'- -GGCaaagGGUaGCCGGCCGg---CC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 49092 0.67 0.710562
Target:  5'- aCGUa-CCCGUCGcGCCGGCgcuCGGCguccUGCa -3'
miRNA:   3'- gGCAaaGGGUAGC-CGGCCG---GCCG----GCG- -5'
11104 3' -61.1 NC_002794.1 + 90965 0.67 0.710562
Target:  5'- cCCGgg-CCCGcuUCGGCgUGGCCucguaccgGGCCGa -3'
miRNA:   3'- -GGCaaaGGGU--AGCCG-GCCGG--------CCGGCg -5'
11104 3' -61.1 NC_002794.1 + 90659 0.67 0.710562
Target:  5'- aCGcucgCgCCGUUGG--GGCCGGCCGCg -3'
miRNA:   3'- gGCaaa-G-GGUAGCCggCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 185777 0.67 0.710562
Target:  5'- cCCGUcacaCGUCGGCCGGCgCGGggacccacaUCGCc -3'
miRNA:   3'- -GGCAaaggGUAGCCGGCCG-GCC---------GGCG- -5'
11104 3' -61.1 NC_002794.1 + 151609 0.67 0.710562
Target:  5'- cCCGcggUUCCuCGgcugaCGGCCGGCacuuGGCuCGCc -3'
miRNA:   3'- -GGCa--AAGG-GUa----GCCGGCCGg---CCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 194747 0.67 0.707758
Target:  5'- aCCGcugcagcaCCCA-CGGCgacugcuccgagaaCGGCCGGCaCGCg -3'
miRNA:   3'- -GGCaaa-----GGGUaGCCG--------------GCCGGCCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 126239 0.68 0.704948
Target:  5'- aCCGUggcgaUCGUggcgcgcgaggucggCGGCUGGCUGGCgGCg -3'
miRNA:   3'- -GGCAaag--GGUA---------------GCCGGCCGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 53296 0.68 0.701195
Target:  5'- uCCaggUgCCGagCGGUCGGCCGgcGCCGCg -3'
miRNA:   3'- -GGcaaAgGGUa-GCCGGCCGGC--CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 60906 0.68 0.701195
Target:  5'- cCCGUUccgccaccacCUCAUCGGCCacacGGCCaucGGCCuGCa -3'
miRNA:   3'- -GGCAAa---------GGGUAGCCGG----CCGG---CCGG-CG- -5'
11104 3' -61.1 NC_002794.1 + 90307 0.68 0.701195
Target:  5'- uCCGUUggCUCGUCGcGCa--CUGGCCGCa -3'
miRNA:   3'- -GGCAAa-GGGUAGC-CGgccGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 53237 0.68 0.701195
Target:  5'- uCCGUccucggCCCGcCGcGCCGGCgucGCCGCg -3'
miRNA:   3'- -GGCAaa----GGGUaGC-CGGCCGgc-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 101629 0.68 0.701195
Target:  5'- gCCGUUucgUCCgcgagCGUgGGCgGGCgGGCgGCg -3'
miRNA:   3'- -GGCAA---AGG-----GUAgCCGgCCGgCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 121971 0.68 0.701195
Target:  5'- uCCGUgcggcucggUCCCGcCGaGCgCGGCCGGgaGCu -3'
miRNA:   3'- -GGCAa--------AGGGUaGC-CG-GCCGGCCggCG- -5'
11104 3' -61.1 NC_002794.1 + 195117 0.68 0.701195
Target:  5'- cUCGUgcgCCCG-CGGCgCGcGCgGGCuCGCg -3'
miRNA:   3'- -GGCAaa-GGGUaGCCG-GC-CGgCCG-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.