miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 582 0.69 0.643225
Target:  5'- cUCGUUUaCCC-UCGGUCcguucguGGCCGGgUGCg -3'
miRNA:   3'- -GGCAAA-GGGuAGCCGG-------CCGGCCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 683 0.67 0.729113
Target:  5'- cCUG-UUCUUcgCGGCCGGaguCGGCUGUu -3'
miRNA:   3'- -GGCaAAGGGuaGCCGGCCg--GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 12182 0.67 0.71987
Target:  5'- gCCGacgCCgCcgCGGCCGGgCG-CCGCu -3'
miRNA:   3'- -GGCaaaGG-GuaGCCGGCCgGCcGGCG- -5'
11104 3' -61.1 NC_002794.1 + 12217 0.69 0.625037
Target:  5'- gCCGgcgg-CGUCGGCgGcGCCGGCgGCg -3'
miRNA:   3'- -GGCaaaggGUAGCCGgC-CGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 13726 0.73 0.416741
Target:  5'- aCCGUgcggaCCCAcacgcuccCGGCCGGCCGacaccagacucGCCGCc -3'
miRNA:   3'- -GGCAaa---GGGUa-------GCCGGCCGGC-----------CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 13798 0.73 0.416741
Target:  5'- gCCGUcUUCgCGaCGGgcCCGGCCGGCgGCg -3'
miRNA:   3'- -GGCA-AAGgGUaGCC--GGCCGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 14192 0.68 0.691778
Target:  5'- aCGUcagcgUCCC---GGCCcGCUGGCCGCc -3'
miRNA:   3'- gGCAa----AGGGuagCCGGcCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 14548 0.66 0.794728
Target:  5'- cUCGcc-CCCGUCGacgcgcgggaggcgaGCCGGCCgaccgaagcgGGCCGUg -3'
miRNA:   3'- -GGCaaaGGGUAGC---------------CGGCCGG----------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 14937 0.66 0.782763
Target:  5'- aCGUgcUCUCgAUCGGCUcGCCcGCCGCc -3'
miRNA:   3'- gGCAa-AGGG-UAGCCGGcCGGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 14990 0.66 0.79978
Target:  5'- cCCGgcagcagcUCCUcgggCGGUcuCGGCUGGCUGCu -3'
miRNA:   3'- -GGCaa------AGGGua--GCCG--GCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 16285 0.68 0.699315
Target:  5'- cCUGUUggcggagucuagCCUggCGGCCgcGGCCGGCUGg -3'
miRNA:   3'- -GGCAAa-----------GGGuaGCCGG--CCGGCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 17490 0.67 0.74737
Target:  5'- gCGUUUgCgAUC-GCCGacGCCGGCCGa -3'
miRNA:   3'- gGCAAAgGgUAGcCGGC--CGGCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 17915 0.66 0.782763
Target:  5'- uCCGgcagcUCaCCAcCGGCCGGCUccccgaccuGGCgGCc -3'
miRNA:   3'- -GGCaa---AG-GGUaGCCGGCCGG---------CCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 17973 0.66 0.774074
Target:  5'- gCCGUgagccuggcgCCCA-CGGCC-GCCGGCgaGUa -3'
miRNA:   3'- -GGCAaa--------GGGUaGCCGGcCGGCCGg-CG- -5'
11104 3' -61.1 NC_002794.1 + 18807 0.66 0.808093
Target:  5'- gCCGg--CCaacggGUCGGCgaccuCGGCCGG-CGCg -3'
miRNA:   3'- -GGCaaaGGg----UAGCCG-----GCCGGCCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 19363 0.66 0.79978
Target:  5'- cCCGccccgCCCGgaUCgGGCgGGCCGGUCa- -3'
miRNA:   3'- -GGCaaa--GGGU--AG-CCGgCCGGCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 19576 0.66 0.765274
Target:  5'- gCCGUcaCCCAgugccuccucCGGcCCGGCgagCGGCCGa -3'
miRNA:   3'- -GGCAaaGGGUa---------GCC-GGCCG---GCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 21852 0.73 0.400573
Target:  5'- cCCGaucgcCCCAUugaaCGGUCcgcgaGGCCGGCCGCg -3'
miRNA:   3'- -GGCaaa--GGGUA----GCCGG-----CCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 21941 0.68 0.691778
Target:  5'- gCGgcgCUCGUCgaaGGCC-GUCGGCCGCu -3'
miRNA:   3'- gGCaaaGGGUAG---CCGGcCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 21987 0.67 0.737368
Target:  5'- uCCGcgaCCCGUCGccggcaaGCCGGCCaaGGCgUGCg -3'
miRNA:   3'- -GGCaaaGGGUAGC-------CGGCCGG--CCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.