miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 22547 0.66 0.782763
Target:  5'- uCCGga--CCGUCcGCCaccgccgacacGGCaCGGCCGCu -3'
miRNA:   3'- -GGCaaagGGUAGcCGG-----------CCG-GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 22891 0.69 0.605911
Target:  5'- cCUGgccUCCCGUUGGUggaCGGCggcgaccgCGGCCGCc -3'
miRNA:   3'- -GGCaa-AGGGUAGCCG---GCCG--------GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 22933 0.82 0.115127
Target:  5'- aCCGgcaCCCAUCGGCUGGCCgacgGGCCGg -3'
miRNA:   3'- -GGCaaaGGGUAGCCGGCCGG----CCGGCg -5'
11104 3' -61.1 NC_002794.1 + 27398 0.66 0.765274
Target:  5'- aCCGgaugaCCGcUCGaCCGGCCGcCCGCg -3'
miRNA:   3'- -GGCaaag-GGU-AGCcGGCCGGCcGGCG- -5'
11104 3' -61.1 NC_002794.1 + 27609 0.74 0.36195
Target:  5'- aCCGUccaCCCgGUCGGaCGGCCGGUCGg -3'
miRNA:   3'- -GGCAaa-GGG-UAGCCgGCCGGCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 29202 0.72 0.441723
Target:  5'- uCCGUccgUCCggCGGUCGGCggccguCGGCCGCc -3'
miRNA:   3'- -GGCAaa-GGGuaGCCGGCCG------GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 31321 0.7 0.549124
Target:  5'- gCGUgagUCUCGUCGGCuCGGCgcccGCCGUg -3'
miRNA:   3'- gGCAa--AGGGUAGCCG-GCCGgc--CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 32297 0.8 0.150282
Target:  5'- gCCGccgCCgCggCGGCCGcGCCGGCCGCg -3'
miRNA:   3'- -GGCaaaGG-GuaGCCGGC-CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 32816 0.72 0.467532
Target:  5'- aCCGUcgUCuUCGUCGGCCucgcGGCCGGCUc- -3'
miRNA:   3'- -GGCAa-AG-GGUAGCCGG----CCGGCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 33430 0.66 0.79726
Target:  5'- cUCGggcuggUCCCGgugcaggaccUCGGgCGGCCGccggacgcgcccacGCCGCu -3'
miRNA:   3'- -GGCaa----AGGGU----------AGCCgGCCGGC--------------CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 34073 0.73 0.377085
Target:  5'- gCCG-UUCCCGccggCGGCCGGgCaGCCGUc -3'
miRNA:   3'- -GGCaAAGGGUa---GCCGGCCgGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 34717 0.7 0.586853
Target:  5'- gCCGgcgCCacgaGGCgCGGgCGGCCGCa -3'
miRNA:   3'- -GGCaaaGGguagCCG-GCCgGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 34782 0.7 0.56791
Target:  5'- cCCGcg-CCagccgaGUCGGCCgaaccGGCCcgGGCCGCg -3'
miRNA:   3'- -GGCaaaGGg-----UAGCCGG-----CCGG--CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 34963 0.7 0.577364
Target:  5'- cCCGcgccUCCCGUCccuGGCCacgaaacuGcGCCGGCUGCg -3'
miRNA:   3'- -GGCaa--AGGGUAG---CCGG--------C-CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 36738 0.68 0.691778
Target:  5'- cCCGUUcacguagaacUCCCGguccuggcggaCGGCCacccagcuguaGCCGGCCGCc -3'
miRNA:   3'- -GGCAA----------AGGGUa----------GCCGGc----------CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 37259 0.66 0.79978
Target:  5'- cUCGcucUCCGUCGGCgGGCgcgCGGgCGCg -3'
miRNA:   3'- -GGCaaaGGGUAGCCGgCCG---GCCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 38445 0.69 0.615468
Target:  5'- gCCGga--CUGagGaGCCGGCgCGGCCGCg -3'
miRNA:   3'- -GGCaaagGGUagC-CGGCCG-GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 38591 0.66 0.774074
Target:  5'- gCCGccuccUCCCGgacgagaGGCCGGaCGGgCGCg -3'
miRNA:   3'- -GGCaa---AGGGUag-----CCGGCCgGCCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 40460 0.68 0.663293
Target:  5'- cCCGggcgcugUCCCuUCGGgCGGCucaucgaaCGGCCGg -3'
miRNA:   3'- -GGCaa-----AGGGuAGCCgGCCG--------GCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 40706 0.66 0.7819
Target:  5'- uCCGUcaacacggugaagUUCUUcuguagAUCGaUCGGCUGGCCGCa -3'
miRNA:   3'- -GGCA-------------AAGGG------UAGCcGGCCGGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.