miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 41226 0.69 0.59637
Target:  5'- uCCGgggauuccUCCCAcgccgCGGCCGccgacGCCGGCgGCc -3'
miRNA:   3'- -GGCaa------AGGGUa----GCCGGC-----CGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 42056 0.66 0.773199
Target:  5'- gCGUg--CCAgaugaugUUGGCCGaCUGGCCGCg -3'
miRNA:   3'- gGCAaagGGU-------AGCCGGCcGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 42179 0.66 0.774074
Target:  5'- uCCGUcUCCgCcacgAUCGGCCGaaacucgccgccGCCGGuCUGCc -3'
miRNA:   3'- -GGCAaAGG-G----UAGCCGGC------------CGGCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 43031 0.67 0.738282
Target:  5'- gUCGgccUCCAUCgcgcggcaGGCCGaGCCGGCCa- -3'
miRNA:   3'- -GGCaaaGGGUAG--------CCGGC-CGGCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 43493 0.66 0.791334
Target:  5'- gCGgaUCCCcUCcGCCaGGCCGGUgaaagCGCg -3'
miRNA:   3'- gGCaaAGGGuAGcCGG-CCGGCCG-----GCG- -5'
11104 3' -61.1 NC_002794.1 + 44242 0.7 0.577364
Target:  5'- gCCGggcggCUCGgugcCGGgCGGCuCGGCCGCc -3'
miRNA:   3'- -GGCaaa--GGGUa---GCCgGCCG-GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 44402 0.7 0.549124
Target:  5'- cCCG-UUCCgGUCuGaCCGGCCGGCgccgaGCg -3'
miRNA:   3'- -GGCaAAGGgUAGcC-GGCCGGCCGg----CG- -5'
11104 3' -61.1 NC_002794.1 + 44676 0.69 0.625037
Target:  5'- uCCGcagCgCCAUCGuccagacccaccGCCGcCCGGCCGCg -3'
miRNA:   3'- -GGCaaaG-GGUAGC------------CGGCcGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 44717 0.68 0.691778
Target:  5'- aCCGcggCgaCGUCGGCCGGC--GCCGCc -3'
miRNA:   3'- -GGCaaaGg-GUAGCCGGCCGgcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 46978 0.66 0.79978
Target:  5'- aCCGUgUUCCuCGUCccccGCCGGCaCGGCaagaCGUg -3'
miRNA:   3'- -GGCA-AAGG-GUAGc---CGGCCG-GCCG----GCG- -5'
11104 3' -61.1 NC_002794.1 + 47743 0.66 0.782763
Target:  5'- gCCGggUCCacgUGG-CGGCCguGGUCGCg -3'
miRNA:   3'- -GGCaaAGGguaGCCgGCCGG--CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 47949 0.7 0.586853
Target:  5'- gCCGcgcgUCCCGgcgcCGGCUGGgCGaccGCCGCg -3'
miRNA:   3'- -GGCaa--AGGGUa---GCCGGCCgGC---CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 48538 0.69 0.59637
Target:  5'- -aGgcUCggGUCGGCCGaccacuccGCCGGCCGCc -3'
miRNA:   3'- ggCaaAGggUAGCCGGC--------CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 48599 0.68 0.662339
Target:  5'- gCGcgUCgCCGUCGGCguCGGCCucagacgcggagcGGCCGUc -3'
miRNA:   3'- gGCaaAG-GGUAGCCG--GCCGG-------------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 48703 0.68 0.691778
Target:  5'- aCGUcggCCCAguacUCGGugcgcggauCCGaCCGGCCGCa -3'
miRNA:   3'- gGCAaa-GGGU----AGCC---------GGCcGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 48872 0.67 0.71987
Target:  5'- -----cCCCGUCGG-CGGCCaGGUgGCa -3'
miRNA:   3'- ggcaaaGGGUAGCCgGCCGG-CCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 48997 0.69 0.63461
Target:  5'- cCCGUUcgaagcucUCCCG-C-GCCGcGgCGGCCGCg -3'
miRNA:   3'- -GGCAA--------AGGGUaGcCGGC-CgGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 49092 0.67 0.710562
Target:  5'- aCGUa-CCCGUCGcGCCGGCgcuCGGCguccUGCa -3'
miRNA:   3'- gGCAaaGGGUAGC-CGGCCG---GCCG----GCG- -5'
11104 3' -61.1 NC_002794.1 + 49394 0.72 0.450238
Target:  5'- gCCGccg-CCGUCGGCCacGG-CGGCCGCg -3'
miRNA:   3'- -GGCaaagGGUAGCCGG--CCgGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 49458 0.67 0.738282
Target:  5'- gCCGUggCgCCGcCGuGaCCGGCCG-CCGCg -3'
miRNA:   3'- -GGCAaaG-GGUaGC-C-GGCCGGCcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.