miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 49587 0.67 0.737368
Target:  5'- aCCGgaUCCCGaucgcgaUCGGCgaCGGCgggcgcCGGCgGCg -3'
miRNA:   3'- -GGCaaAGGGU-------AGCCG--GCCG------GCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 51200 0.81 0.13004
Target:  5'- cUCGUUcgcucgCCCGcggagCGGCCGGCCGGCCGa -3'
miRNA:   3'- -GGCAAa-----GGGUa----GCCGGCCGGCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 51372 0.67 0.75637
Target:  5'- gCCGc--CCCGUcCGGCCGGCgacaGG-CGCc -3'
miRNA:   3'- -GGCaaaGGGUA-GCCGGCCGg---CCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 52814 0.68 0.667107
Target:  5'- gCCGgcagCUCGUCcugccguucguagaGGCCGGUcagcacguucgccaCGGCCGCg -3'
miRNA:   3'- -GGCaaa-GGGUAG--------------CCGGCCG--------------GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 52914 0.7 0.539803
Target:  5'- gCCGUcgCcgccgCCGUCGcUCGGCCGGCaCGCg -3'
miRNA:   3'- -GGCAaaG-----GGUAGCcGGCCGGCCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 53237 0.68 0.701195
Target:  5'- uCCGUccucggCCCGcCGcGCCGGCgucGCCGCg -3'
miRNA:   3'- -GGCAaa----GGGUaGC-CGGCCGgc-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 53296 0.68 0.701195
Target:  5'- uCCaggUgCCGagCGGUCGGCCGgcGCCGCg -3'
miRNA:   3'- -GGcaaAgGGUa-GCCGGCCGGC--CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 53732 0.69 0.63461
Target:  5'- cCCGcg--CCAUC-GCCGGCCG-CCGCu -3'
miRNA:   3'- -GGCaaagGGUAGcCGGCCGGCcGGCG- -5'
11104 3' -61.1 NC_002794.1 + 53901 0.67 0.71987
Target:  5'- uCCGgcggcgUCCuCGUCGccGUCGGCgGcGCCGCc -3'
miRNA:   3'- -GGCaa----AGG-GUAGC--CGGCCGgC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 54848 0.72 0.433301
Target:  5'- cCCaacgCCCGUaGGCCGGCgCGGgCCGCc -3'
miRNA:   3'- -GGcaaaGGGUAgCCGGCCG-GCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 55341 0.69 0.63461
Target:  5'- cCCGgggucgcgCCCGaggCGGCCGaGgCGGCCGa -3'
miRNA:   3'- -GGCaaa-----GGGUa--GCCGGC-CgGCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 57405 0.67 0.71987
Target:  5'- uCCGgcgCCCGcgUGGCCGGCgugcUGGUCGg -3'
miRNA:   3'- -GGCaaaGGGUa-GCCGGCCG----GCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 58049 0.74 0.369464
Target:  5'- cCCGUc-CCCGUCGG-CGGCCccGGCgGCg -3'
miRNA:   3'- -GGCAaaGGGUAGCCgGCCGG--CCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 58124 0.71 0.494096
Target:  5'- aCCGagcCCCugggCGGCCuGGCCcGCCGCc -3'
miRNA:   3'- -GGCaaaGGGua--GCCGG-CCGGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 60092 0.69 0.644182
Target:  5'- -gGUgcUCCA-CGGCCaGCUGGCCGUc -3'
miRNA:   3'- ggCAaaGGGUaGCCGGcCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 60906 0.68 0.701195
Target:  5'- cCCGUUccgccaccacCUCAUCGGCCacacGGCCaucGGCCuGCa -3'
miRNA:   3'- -GGCAAa---------GGGUAGCCGG----CCGG---CCGG-CG- -5'
11104 3' -61.1 NC_002794.1 + 61153 0.67 0.741927
Target:  5'- cCCGac-CCCGagcgcgcgguccggaUCGG-CGGCUGGUCGCu -3'
miRNA:   3'- -GGCaaaGGGU---------------AGCCgGCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 61810 0.67 0.738282
Target:  5'- cCCGcucaUCuCCggCGGCC-GCCGGCgGCc -3'
miRNA:   3'- -GGCaa--AG-GGuaGCCGGcCGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 63149 0.7 0.56791
Target:  5'- gCGUgcacUCCCAgcugCuGCaCGGCCgaGGCCGCg -3'
miRNA:   3'- gGCAa---AGGGUa---GcCG-GCCGG--CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 63405 0.78 0.207538
Target:  5'- cCCGUUUCCCGaCGGCCGgacggacgaugagcGCCcgacaccaccacGGCCGCg -3'
miRNA:   3'- -GGCAAAGGGUaGCCGGC--------------CGG------------CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.