miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 66035 0.67 0.738282
Target:  5'- gCCGUcg-UCGUCgGGCCGGCagCGGCgGCc -3'
miRNA:   3'- -GGCAaagGGUAG-CCGGCCG--GCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 66710 0.68 0.682316
Target:  5'- gCCGcg-CCCGgcaCGGCCGccgccaccGCCGGCgGUg -3'
miRNA:   3'- -GGCaaaGGGUa--GCCGGC--------CGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 66841 0.75 0.292756
Target:  5'- uCCGggcgcCgCCGUCGGCgCGGCgaGGCCGCg -3'
miRNA:   3'- -GGCaaa--G-GGUAGCCG-GCCGg-CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 66895 0.7 0.577364
Target:  5'- gCCGacUCCCGUuccCGGUCcuCCGGCCGCc -3'
miRNA:   3'- -GGCaaAGGGUA---GCCGGccGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 67012 0.67 0.729113
Target:  5'- aCGagUCCgGcggcggCGGCCGGCUcccGCCGCg -3'
miRNA:   3'- gGCaaAGGgUa-----GCCGGCCGGc--CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 67537 0.67 0.74737
Target:  5'- uCCGgcuugagCCC-UCcGCCcgGGCCGcGCCGCa -3'
miRNA:   3'- -GGCaaa----GGGuAGcCGG--CCGGC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 67834 0.66 0.774074
Target:  5'- aCCGgccCgCCGUCGcCCGGCgCcGCCGCg -3'
miRNA:   3'- -GGCaaaG-GGUAGCcGGCCG-GcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 68460 0.76 0.28895
Target:  5'- cCCGUUUCUucacggcgCAguggggcacggaggCGGCCGaGCCGGCCGUg -3'
miRNA:   3'- -GGCAAAGG--------GUa-------------GCCGGC-CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 68925 0.67 0.74737
Target:  5'- gCGgcgUCCuCGUC-GCCcGCgGGCCGCg -3'
miRNA:   3'- gGCaa-AGG-GUAGcCGGcCGgCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 69041 0.71 0.529612
Target:  5'- gCCGgcUUCCUcgCuccgcucgccacgGGCCGccGCCGGCCGCc -3'
miRNA:   3'- -GGCa-AAGGGuaG-------------CCGGC--CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 69736 0.7 0.56791
Target:  5'- gCCGgagCgCCA-CGGCCGGCgacGCCGCg -3'
miRNA:   3'- -GGCaaaG-GGUaGCCGGCCGgc-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 70054 0.73 0.400573
Target:  5'- -gGUcgCCCgGUCGGgCGGCCGcaGCCGCa -3'
miRNA:   3'- ggCAaaGGG-UAGCCgGCCGGC--CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 70220 0.73 0.408607
Target:  5'- cCCGgacggUCgGgCGGgCGGCCGGCCGCc -3'
miRNA:   3'- -GGCaaa--GGgUaGCCgGCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 71129 0.7 0.549124
Target:  5'- cUCGUUcaUCuCCGUCaGCgGGCUGuGCCGCc -3'
miRNA:   3'- -GGCAA--AG-GGUAGcCGgCCGGC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 71388 0.68 0.682316
Target:  5'- aCCuccUCCaCGgucugCGGCUcgGGCCGGCCGUc -3'
miRNA:   3'- -GGcaaAGG-GUa----GCCGG--CCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 71840 0.66 0.790483
Target:  5'- gCCGUc-CCCGUCGacgggaccucaccGCCGGCCaGacuCCGCu -3'
miRNA:   3'- -GGCAaaGGGUAGC-------------CGGCCGGcC---GGCG- -5'
11104 3' -61.1 NC_002794.1 + 72449 0.66 0.782763
Target:  5'- aCCGgcggcgCCCcgCGcCCGGCCccgcGGCgGCg -3'
miRNA:   3'- -GGCaaa---GGGuaGCcGGCCGG----CCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 72720 0.68 0.653745
Target:  5'- aCCGUg-CCCAUgaCGGCCccgcgcucccgcGG-CGGCCGCc -3'
miRNA:   3'- -GGCAaaGGGUA--GCCGG------------CCgGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 75269 0.76 0.268118
Target:  5'- cCCGgcuccaccgCCCAccCGGCCGGCCGGCgccuCGCc -3'
miRNA:   3'- -GGCaaa------GGGUa-GCCGGCCGGCCG----GCG- -5'
11104 3' -61.1 NC_002794.1 + 75367 0.71 0.503104
Target:  5'- aCCGa--CCCGccgCGGCCGGCggCGGCgGCc -3'
miRNA:   3'- -GGCaaaGGGUa--GCCGGCCG--GCCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.