miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 195621 0.73 0.408607
Target:  5'- uCCGg--CCCAaaCGGCCGGCgacgaCGaGCCGCa -3'
miRNA:   3'- -GGCaaaGGGUa-GCCGGCCG-----GC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 195117 0.68 0.701195
Target:  5'- cUCGUgcgCCCG-CGGCgCGcGCgGGCuCGCg -3'
miRNA:   3'- -GGCAaa-GGGUaGCCG-GC-CGgCCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 194747 0.67 0.707758
Target:  5'- aCCGcugcagcaCCCA-CGGCgacugcuccgagaaCGGCCGGCaCGCg -3'
miRNA:   3'- -GGCaaa-----GGGUaGCCG--------------GCCGGCCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 194507 0.68 0.672819
Target:  5'- cCCGg--CCCG-CGGCCcgcgugccGCCGGCCcaGCa -3'
miRNA:   3'- -GGCaaaGGGUaGCCGGc-------CGGCCGG--CG- -5'
11104 3' -61.1 NC_002794.1 + 193912 0.66 0.791334
Target:  5'- cUCGUccucUCCCAcuucuUCGGCCaccGCCGGCUccgGCc -3'
miRNA:   3'- -GGCAa---AGGGU-----AGCCGGc--CGGCCGG---CG- -5'
11104 3' -61.1 NC_002794.1 + 193643 0.74 0.354542
Target:  5'- uUCGUUUCCC--CGGUCGGCucCGGCgCGCc -3'
miRNA:   3'- -GGCAAAGGGuaGCCGGCCG--GCCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 193421 0.69 0.59637
Target:  5'- gCCGccgCCCGUCGuccaGCCGuCCGGCaCGCc -3'
miRNA:   3'- -GGCaaaGGGUAGC----CGGCcGGCCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 192428 0.66 0.782763
Target:  5'- aCGggUCCg--CGGCCGGC-GcGUCGCg -3'
miRNA:   3'- gGCaaAGGguaGCCGGCCGgC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 190016 0.75 0.305723
Target:  5'- uCCGgg-UCCAUCGG-CGGCCGGUagCGCa -3'
miRNA:   3'- -GGCaaaGGGUAGCCgGCCGGCCG--GCG- -5'
11104 3' -61.1 NC_002794.1 + 189884 0.66 0.774074
Target:  5'- aCCGg--CCCGcUCgGGCCcGCCGucagcgccGCCGCg -3'
miRNA:   3'- -GGCaaaGGGU-AG-CCGGcCGGC--------CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 189604 0.66 0.774074
Target:  5'- cCCGUccgCCCGagacccgccgacUCGGCCgacuggcuagcuGGCUGGCUGa -3'
miRNA:   3'- -GGCAaa-GGGU------------AGCCGG------------CCGGCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 189562 0.77 0.229066
Target:  5'- gCGg-UCCCGcUCGGUCGGCCGGCC-Cg -3'
miRNA:   3'- gGCaaAGGGU-AGCCGGCCGGCCGGcG- -5'
11104 3' -61.1 NC_002794.1 + 188767 0.67 0.71987
Target:  5'- aCGUggaacagCCCGgugcagCGGUagCGGCCGGCCccGCc -3'
miRNA:   3'- gGCAaa-----GGGUa-----GCCG--GCCGGCCGG--CG- -5'
11104 3' -61.1 NC_002794.1 + 188350 0.79 0.173348
Target:  5'- gCCGUcgcgCCCGUcCGGCCGGCggCGGCCGa -3'
miRNA:   3'- -GGCAaa--GGGUA-GCCGGCCG--GCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 188309 0.68 0.660431
Target:  5'- cCCGg--CCCGUCGucgucguccucgucGCCGccGCCGGCgGCn -3'
miRNA:   3'- -GGCaaaGGGUAGC--------------CGGC--CGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 187695 0.69 0.59637
Target:  5'- gCGg--CCCGUUGGCCGuCUccgucacgGGCCGCa -3'
miRNA:   3'- gGCaaaGGGUAGCCGGCcGG--------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 187572 0.74 0.354542
Target:  5'- cCCGUaccCgCCGUCGGCgCGGCCGccGUCGCg -3'
miRNA:   3'- -GGCAaa-G-GGUAGCCG-GCCGGC--CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 187211 0.74 0.369464
Target:  5'- cCCGaccaUCuCCAgCGGCucCGGCUGGCCGCa -3'
miRNA:   3'- -GGCaa--AG-GGUaGCCG--GCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 187054 0.7 0.56791
Target:  5'- cCCGgagCCCG-CGGCCcGCCagguGCCGCa -3'
miRNA:   3'- -GGCaaaGGGUaGCCGGcCGGc---CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 186948 0.66 0.774074
Target:  5'- aCGg--CCCccgGGCC-GCUGGCCGCc -3'
miRNA:   3'- gGCaaaGGGuagCCGGcCGGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.