miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 186634 0.67 0.729113
Target:  5'- gCCGacacagCCCG-C-GCgGGUCGGCCGCg -3'
miRNA:   3'- -GGCaaa---GGGUaGcCGgCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 186292 0.71 0.503104
Target:  5'- aCCGcggCCaggCGGCCGGUCG-CCGCg -3'
miRNA:   3'- -GGCaaaGGguaGCCGGCCGGCcGGCG- -5'
11104 3' -61.1 NC_002794.1 + 186024 0.73 0.377085
Target:  5'- cCCGgg-CCCGgaccCGGgccCCGGCUGGCCGUc -3'
miRNA:   3'- -GGCaaaGGGUa---GCC---GGCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 185914 0.71 0.488727
Target:  5'- aCCGgg-CCCcUCGccaccGCCGGCCacccgccaggcucgcGGCCGCg -3'
miRNA:   3'- -GGCaaaGGGuAGC-----CGGCCGG---------------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 185777 0.67 0.710562
Target:  5'- cCCGUcacaCGUCGGCCGGCgCGGggacccacaUCGCc -3'
miRNA:   3'- -GGCAaaggGUAGCCGGCCG-GCC---------GGCG- -5'
11104 3' -61.1 NC_002794.1 + 185752 0.7 0.56791
Target:  5'- aCGcgUCCag-CcGCCGGCgCGGCCGCc -3'
miRNA:   3'- gGCaaAGGguaGcCGGCCG-GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 185265 0.66 0.782763
Target:  5'- gCGgacgCCGcCGGCCGaGUgGGCCGCc -3'
miRNA:   3'- gGCaaagGGUaGCCGGC-CGgCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 185072 0.67 0.735539
Target:  5'- gCCGcggCCCGUC-GCCGuagcaggcguaccaGCCGGUCGUg -3'
miRNA:   3'- -GGCaaaGGGUAGcCGGC--------------CGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 184007 0.69 0.63461
Target:  5'- aCCGUguccaCCAUC-GCCGGCCGccacggcaCCGCg -3'
miRNA:   3'- -GGCAaag--GGUAGcCGGCCGGCc-------GGCG- -5'
11104 3' -61.1 NC_002794.1 + 183362 0.67 0.729113
Target:  5'- gCCGgacCCCAgguccCGGCCGugccccgucccGCCGaGCUGCa -3'
miRNA:   3'- -GGCaaaGGGUa----GCCGGC-----------CGGC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 182970 0.68 0.672819
Target:  5'- gCCGgcUCCuCGUucgagccgaCGGCCGGCgCuucGCCGCg -3'
miRNA:   3'- -GGCaaAGG-GUA---------GCCGGCCG-Gc--CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 182072 0.67 0.74737
Target:  5'- cCUGcgUCCgGUCGGCCaccGCCaGCCaGCg -3'
miRNA:   3'- -GGCaaAGGgUAGCCGGc--CGGcCGG-CG- -5'
11104 3' -61.1 NC_002794.1 + 181726 0.69 0.621209
Target:  5'- cCCGUcUCgCGgaacacgcgcgagCGGCCGGCCaGcCCGCu -3'
miRNA:   3'- -GGCAaAGgGUa------------GCCGGCCGGcC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 181527 0.73 0.377085
Target:  5'- uCCGUUcgCCCGccgcCGGCgGGCCGG-CGCu -3'
miRNA:   3'- -GGCAAa-GGGUa---GCCGgCCGGCCgGCG- -5'
11104 3' -61.1 NC_002794.1 + 181390 0.72 0.467532
Target:  5'- gCCGUcaguucgCCCG--GGCCGGCCG-CCGCc -3'
miRNA:   3'- -GGCAaa-----GGGUagCCGGCCGGCcGGCG- -5'
11104 3' -61.1 NC_002794.1 + 180882 0.73 0.408607
Target:  5'- uCCGgcgcgCCCGgucUCGGCCGcGgacUCGGCCGCg -3'
miRNA:   3'- -GGCaaa--GGGU---AGCCGGC-C---GGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 180274 0.7 0.558494
Target:  5'- gCCGgucUCCUcgCGGcCCGcGCCG-CCGCa -3'
miRNA:   3'- -GGCaa-AGGGuaGCC-GGC-CGGCcGGCG- -5'
11104 3' -61.1 NC_002794.1 + 178927 0.68 0.663293
Target:  5'- gCGUgUUCCUGUCGGCUcaucuuguccGCCacGGCCGCg -3'
miRNA:   3'- gGCA-AAGGGUAGCCGGc---------CGG--CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 176592 0.67 0.74737
Target:  5'- aUGUgaCUCAcggagagCGGCCGGCaCGGCCa- -3'
miRNA:   3'- gGCAaaGGGUa------GCCGGCCG-GCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 166738 0.68 0.660431
Target:  5'- aCCGaacaUUCUCAUCGGgcuCCGGCUgacgcguauuggauGGCCGUc -3'
miRNA:   3'- -GGCa---AAGGGUAGCC---GGCCGG--------------CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.