miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 157006 0.69 0.63461
Target:  5'- gCGgg-CCCG-CGGCCaGCCGGCuuauuCGCu -3'
miRNA:   3'- gGCaaaGGGUaGCCGGcCGGCCG-----GCG- -5'
11104 3' -61.1 NC_002794.1 + 156534 0.67 0.71987
Target:  5'- -aGggUUCCGUCGcGUCGGCCguggauucGGCaCGCg -3'
miRNA:   3'- ggCaaAGGGUAGC-CGGCCGG--------CCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 156393 0.71 0.494096
Target:  5'- ----cUUCUAgagCGGCCGGCgccgCGGCCGCg -3'
miRNA:   3'- ggcaaAGGGUa--GCCGGCCG----GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 154340 0.71 0.529612
Target:  5'- cCCGggUgCCG-CGGCCGaGCUcccgcgcgguccaGGCCGCg -3'
miRNA:   3'- -GGCaaAgGGUaGCCGGC-CGG-------------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 152324 0.7 0.586853
Target:  5'- uCCGUUUUCUGUgCGaGUCGGUccacgcgcucuaCGGCCGCu -3'
miRNA:   3'- -GGCAAAGGGUA-GC-CGGCCG------------GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 151733 0.68 0.663293
Target:  5'- aCGU----CGUCGGCC-GCCGGUCGCc -3'
miRNA:   3'- gGCAaaggGUAGCCGGcCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 151609 0.67 0.710562
Target:  5'- cCCGcggUUCCuCGgcugaCGGCCGGCacuuGGCuCGCc -3'
miRNA:   3'- -GGCa--AAGG-GUa----GCCGGCCGg---CCG-GCG- -5'
11104 3' -61.1 NC_002794.1 + 151028 0.68 0.672819
Target:  5'- cCCGUggucgCCCGUCugaugacgGGCgaGuGCaCGGCCGCg -3'
miRNA:   3'- -GGCAaa---GGGUAG--------CCGg-C-CG-GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 150788 0.72 0.457114
Target:  5'- cUCGUgcgacuccaggCCCcgCGGCggaCGGCCGaGCCGCu -3'
miRNA:   3'- -GGCAaa---------GGGuaGCCG---GCCGGC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 150526 0.67 0.710562
Target:  5'- cUCGgc-CCCGUagccgGGCCGGCgccaUGGCCGUc -3'
miRNA:   3'- -GGCaaaGGGUAg----CCGGCCG----GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 149969 0.66 0.774074
Target:  5'- gCCGaccUgCCG-CGGaCCGG-CGGCCGCu -3'
miRNA:   3'- -GGCaa-AgGGUaGCC-GGCCgGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 149203 0.7 0.577364
Target:  5'- aCGUgagCUAUcCGGCUGGCCGGaaGCg -3'
miRNA:   3'- gGCAaagGGUA-GCCGGCCGGCCggCG- -5'
11104 3' -61.1 NC_002794.1 + 148566 0.66 0.792185
Target:  5'- --cUUUCUgcUCGGacugaucugcgagcaCGGCCGGCCGCc -3'
miRNA:   3'- ggcAAAGGguAGCCg--------------GCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 148539 0.69 0.63461
Target:  5'- cCCGUgcCUCGUCGGCUGcGCgCGGCUc- -3'
miRNA:   3'- -GGCAaaGGGUAGCCGGC-CG-GCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 147511 0.72 0.433301
Target:  5'- aCCGagUUCC-UCGGCCuggGGCUGGuCCGCu -3'
miRNA:   3'- -GGCaaAGGGuAGCCGG---CCGGCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 146996 0.69 0.615468
Target:  5'- gCCGg--CCgaCGUCGGCgGcGgCGGCCGCc -3'
miRNA:   3'- -GGCaaaGG--GUAGCCGgC-CgGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 143815 0.73 0.408607
Target:  5'- gCCGUcggUUCCCAUggcgagCGGCCGGuccgacgccuCCGGCCagGCg -3'
miRNA:   3'- -GGCA---AAGGGUA------GCCGGCC----------GGCCGG--CG- -5'
11104 3' -61.1 NC_002794.1 + 142998 0.68 0.679471
Target:  5'- gCCGUggccaggaaCCCGgucagcgugCGGUCGGCCgggucgacgugcagGGCCGCc -3'
miRNA:   3'- -GGCAaa-------GGGUa--------GCCGGCCGG--------------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 142794 0.68 0.691778
Target:  5'- gCGUgcagCCgCAguUCGGCCgGGUCGGCCu- -3'
miRNA:   3'- gGCAaa--GG-GU--AGCCGG-CCGGCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 141690 0.67 0.71987
Target:  5'- gCCGUacgcggUCCCGUCguGGCCGaaCCGGCguuCGCc -3'
miRNA:   3'- -GGCAa-----AGGGUAG--CCGGCc-GGCCG---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.