miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 141619 0.72 0.476307
Target:  5'- aCCGgcUCgCgGUCuagcgacgggaaGGCCGGCgUGGCCGCg -3'
miRNA:   3'- -GGCaaAG-GgUAG------------CCGGCCG-GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 140288 0.66 0.808093
Target:  5'- gCGUUUuugggCCUcUCGGCCaaggccuGCCGGCgGCu -3'
miRNA:   3'- gGCAAA-----GGGuAGCCGGc------CGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 138740 0.67 0.755474
Target:  5'- aCGgggUCCC--CGGCCcuccgggGGCCGaGUCGCg -3'
miRNA:   3'- gGCaa-AGGGuaGCCGG-------CCGGC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 137138 0.79 0.181714
Target:  5'- uCCGUccgCCCGccCGGCCGGCCgcccucggucccGGCCGCu -3'
miRNA:   3'- -GGCAaa-GGGUa-GCCGGCCGG------------CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 135594 0.67 0.746465
Target:  5'- gCCGgggUCCGUCgGGUCGGaagcggaUCGGUCGCa -3'
miRNA:   3'- -GGCaaaGGGUAG-CCGGCC-------GGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 131370 0.67 0.729113
Target:  5'- aCCGcUUCgCCcgUGGUCGGC--GCCGCg -3'
miRNA:   3'- -GGCaAAG-GGuaGCCGGCCGgcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 131017 0.72 0.458841
Target:  5'- aCGggUCgguggUCGUgCGGCgCGGCCGGCUGCc -3'
miRNA:   3'- gGCaaAG-----GGUA-GCCG-GCCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 130651 0.71 0.503104
Target:  5'- cCCGccgCCCcgCcGCCGGCCGcgggcuccGCCGCg -3'
miRNA:   3'- -GGCaaaGGGuaGcCGGCCGGC--------CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 130417 0.66 0.774074
Target:  5'- aCCaugUUCCaCAUCGGCCGuCUGGUCcagGCg -3'
miRNA:   3'- -GGca-AAGG-GUAGCCGGCcGGCCGG---CG- -5'
11104 3' -61.1 NC_002794.1 + 129796 0.67 0.74737
Target:  5'- gCCGgaaUUCgCUGUCGGaCCGcGUCuGCCGCa -3'
miRNA:   3'- -GGCa--AAG-GGUAGCC-GGC-CGGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 128019 0.66 0.798941
Target:  5'- gCCGc--CCCGUCGGCUGacaccccGCgGGCCa- -3'
miRNA:   3'- -GGCaaaGGGUAGCCGGC-------CGgCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 127572 0.71 0.521328
Target:  5'- gCGUUuaCCGUgGGCaCGGCuuucacucugcgCGGCCGCu -3'
miRNA:   3'- gGCAAagGGUAgCCG-GCCG------------GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 127347 0.68 0.653745
Target:  5'- gCCGagacgCUCG-CGGCggCGGCgCGGCCGCu -3'
miRNA:   3'- -GGCaaa--GGGUaGCCG--GCCG-GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 126239 0.68 0.704948
Target:  5'- aCCGUggcgaUCGUggcgcgcgaggucggCGGCUGGCUGGCgGCg -3'
miRNA:   3'- -GGCAaag--GGUA---------------GCCGGCCGGCCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 126044 0.69 0.605911
Target:  5'- uUCGg--CCUggCGGUCGGaCUGGUCGCg -3'
miRNA:   3'- -GGCaaaGGGuaGCCGGCC-GGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 125313 0.66 0.791334
Target:  5'- gCCGUUcgCCCG-C-GCCGaGCCGGagCGCg -3'
miRNA:   3'- -GGCAAa-GGGUaGcCGGC-CGGCCg-GCG- -5'
11104 3' -61.1 NC_002794.1 + 124822 0.66 0.79978
Target:  5'- aCGUgcgaCCUGUCGGCgaccaucugcaUGG-CGGCCGCc -3'
miRNA:   3'- gGCAaa--GGGUAGCCG-----------GCCgGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 124245 0.71 0.494096
Target:  5'- cCUG-UUCCCcgCGcgcggguagucGCCGGCCaGCCGCc -3'
miRNA:   3'- -GGCaAAGGGuaGC-----------CGGCCGGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 123443 0.66 0.791334
Target:  5'- aCCGUcgCCgAgCGGCUGGCCGaGCa-- -3'
miRNA:   3'- -GGCAaaGGgUaGCCGGCCGGC-CGgcg -5'
11104 3' -61.1 NC_002794.1 + 123250 0.67 0.75637
Target:  5'- cCUGUgccacUUUCGcCGGCUGGuCCGGgCCGCg -3'
miRNA:   3'- -GGCAa----AGGGUaGCCGGCC-GGCC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.