miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 3' -61.1 NC_002794.1 + 186948 0.66 0.774074
Target:  5'- aCGg--CCCccgGGCC-GCUGGCCGCc -3'
miRNA:   3'- gGCaaaGGGuagCCGGcCGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 189884 0.66 0.774074
Target:  5'- aCCGg--CCCGcUCgGGCCcGCCGucagcgccGCCGCg -3'
miRNA:   3'- -GGCaaaGGGU-AG-CCGGcCGGC--------CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 130417 0.66 0.774074
Target:  5'- aCCaugUUCCaCAUCGGCCGuCUGGUCcagGCg -3'
miRNA:   3'- -GGca-AAGG-GUAGCCGGCcGGCCGG---CG- -5'
11104 3' -61.1 NC_002794.1 + 189604 0.66 0.774074
Target:  5'- cCCGUccgCCCGagacccgccgacUCGGCCgacuggcuagcuGGCUGGCUGa -3'
miRNA:   3'- -GGCAaa-GGGU------------AGCCGG------------CCGGCCGGCg -5'
11104 3' -61.1 NC_002794.1 + 115183 0.66 0.774074
Target:  5'- aCGg--CCCGgugccggCGGUCGaGCCGGCguaGCg -3'
miRNA:   3'- gGCaaaGGGUa------GCCGGC-CGGCCGg--CG- -5'
11104 3' -61.1 NC_002794.1 + 17973 0.66 0.774074
Target:  5'- gCCGUgagccuggcgCCCA-CGGCC-GCCGGCgaGUa -3'
miRNA:   3'- -GGCAaa--------GGGUaGCCGGcCGGCCGg-CG- -5'
11104 3' -61.1 NC_002794.1 + 42179 0.66 0.774074
Target:  5'- uCCGUcUCCgCcacgAUCGGCCGaaacucgccgccGCCGGuCUGCc -3'
miRNA:   3'- -GGCAaAGG-G----UAGCCGGC------------CGGCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 82062 0.66 0.782763
Target:  5'- gCGUcgUCC-UCGGCCucGCCGGCCc- -3'
miRNA:   3'- gGCAaaGGGuAGCCGGc-CGGCCGGcg -5'
11104 3' -61.1 NC_002794.1 + 99933 0.66 0.782763
Target:  5'- gCGUggUCUUG-CGGCuguuCGGCCGGaCCGCc -3'
miRNA:   3'- gGCAa-AGGGUaGCCG----GCCGGCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 47743 0.66 0.782763
Target:  5'- gCCGggUCCacgUGG-CGGCCguGGUCGCg -3'
miRNA:   3'- -GGCaaAGGguaGCCgGCCGG--CCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 84967 0.66 0.791334
Target:  5'- gCGgaUCCU--UGGCC--CCGGCCGCg -3'
miRNA:   3'- gGCaaAGGGuaGCCGGccGGCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 109495 0.66 0.791334
Target:  5'- aCGUUUCgugaugaCGUUGGuCCGcCCGGcCCGCg -3'
miRNA:   3'- gGCAAAGg------GUAGCC-GGCcGGCC-GGCG- -5'
11104 3' -61.1 NC_002794.1 + 71840 0.66 0.790483
Target:  5'- gCCGUc-CCCGUCGacgggaccucaccGCCGGCCaGacuCCGCu -3'
miRNA:   3'- -GGCAaaGGGUAGC-------------CGGCCGGcC---GGCG- -5'
11104 3' -61.1 NC_002794.1 + 107339 0.66 0.791334
Target:  5'- uUCGg--UCCGUgGGuCCGGUCG-CCGCg -3'
miRNA:   3'- -GGCaaaGGGUAgCC-GGCCGGCcGGCG- -5'
11104 3' -61.1 NC_002794.1 + 192428 0.66 0.782763
Target:  5'- aCGggUCCg--CGGCCGGC-GcGUCGCg -3'
miRNA:   3'- gGCaaAGGguaGCCGGCCGgC-CGGCG- -5'
11104 3' -61.1 NC_002794.1 + 72449 0.66 0.782763
Target:  5'- aCCGgcggcgCCCcgCGcCCGGCCccgcGGCgGCg -3'
miRNA:   3'- -GGCaaa---GGGuaGCcGGCCGG----CCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 22547 0.66 0.782763
Target:  5'- uCCGga--CCGUCcGCCaccgccgacacGGCaCGGCCGCu -3'
miRNA:   3'- -GGCaaagGGUAGcCGG-----------CCG-GCCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 14937 0.66 0.782763
Target:  5'- aCGUgcUCUCgAUCGGCUcGCCcGCCGCc -3'
miRNA:   3'- gGCAa-AGGG-UAGCCGGcCGGcCGGCG- -5'
11104 3' -61.1 NC_002794.1 + 17915 0.66 0.782763
Target:  5'- uCCGgcagcUCaCCAcCGGCCGGCUccccgaccuGGCgGCc -3'
miRNA:   3'- -GGCaa---AG-GGUaGCCGGCCGG---------CCGgCG- -5'
11104 3' -61.1 NC_002794.1 + 185265 0.66 0.782763
Target:  5'- gCGgacgCCGcCGGCCGaGUgGGCCGCc -3'
miRNA:   3'- gGCaaagGGUaGCCGGC-CGgCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.