miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11104 5' -51.8 NC_002794.1 + 110528 0.66 0.996847
Target:  5'- cGGCGuGCGGGAGaacgCGGCGAcgACGu -3'
miRNA:   3'- cUCGCuUGCUCUUgcuaGCCGCU--UGC- -5'
11104 5' -51.8 NC_002794.1 + 8117 0.66 0.996847
Target:  5'- cGAGCGGGCGGcGGCcuccUCGGUGAccgGCGa -3'
miRNA:   3'- -CUCGCUUGCUcUUGcu--AGCCGCU---UGC- -5'
11104 5' -51.8 NC_002794.1 + 105868 0.66 0.996847
Target:  5'- uGAGCGGcgcCGAGGACG-UgGGgGGugGg -3'
miRNA:   3'- -CUCGCUu--GCUCUUGCuAgCCgCUugC- -5'
11104 5' -51.8 NC_002794.1 + 37328 0.66 0.996847
Target:  5'- gGAGCGGugGGGccCGggCGGC-AGCa -3'
miRNA:   3'- -CUCGCUugCUCuuGCuaGCCGcUUGc -5'
11104 5' -51.8 NC_002794.1 + 179037 0.66 0.996796
Target:  5'- aGAGCGAACGcacGGAAgguucuuCGGUCGGguucugGGACGa -3'
miRNA:   3'- -CUCGCUUGC---UCUU-------GCUAGCCg-----CUUGC- -5'
11104 5' -51.8 NC_002794.1 + 41640 0.66 0.996307
Target:  5'- -uGCG-AC-AGGAUGAaggCGGCGAACGu -3'
miRNA:   3'- cuCGCuUGcUCUUGCUa--GCCGCUUGC- -5'
11104 5' -51.8 NC_002794.1 + 71314 0.66 0.996307
Target:  5'- cGGGCG-GCGAGcGCGccaccUCGGCG-GCGa -3'
miRNA:   3'- -CUCGCuUGCUCuUGCu----AGCCGCuUGC- -5'
11104 5' -51.8 NC_002794.1 + 184045 0.66 0.996307
Target:  5'- cAGCGcGCGGucGCGGgccgCGGCGAAgCGg -3'
miRNA:   3'- cUCGCuUGCUcuUGCUa---GCCGCUU-GC- -5'
11104 5' -51.8 NC_002794.1 + 137439 0.66 0.996307
Target:  5'- cGGCGcuCuGGAACGAcUCGGCGGAa- -3'
miRNA:   3'- cUCGCuuGcUCUUGCU-AGCCGCUUgc -5'
11104 5' -51.8 NC_002794.1 + 14887 0.66 0.995948
Target:  5'- -cGCGAGcCGAGAccgaccuucgcgcuCGAUCGaGCGGGCu -3'
miRNA:   3'- cuCGCUU-GCUCUu-------------GCUAGC-CGCUUGc -5'
11104 5' -51.8 NC_002794.1 + 132107 0.66 0.995694
Target:  5'- cGAGUGccAugGGGugGACGGUCGGCuGGCa -3'
miRNA:   3'- -CUCGC--UugCUC--UUGCUAGCCGcUUGc -5'
11104 5' -51.8 NC_002794.1 + 109392 0.66 0.995694
Target:  5'- -uGCGGAUGcuGGCGAUCGcGCG-ACGc -3'
miRNA:   3'- cuCGCUUGCucUUGCUAGC-CGCuUGC- -5'
11104 5' -51.8 NC_002794.1 + 175731 0.66 0.995694
Target:  5'- gGAGCGuggccgUGAGAGCGAgUCuGUGGACGc -3'
miRNA:   3'- -CUCGCuu----GCUCUUGCU-AGcCGCUUGC- -5'
11104 5' -51.8 NC_002794.1 + 147681 0.66 0.995694
Target:  5'- -cGCGcuCGAGGACccggCGGCGAuGCGg -3'
miRNA:   3'- cuCGCuuGCUCUUGcua-GCCGCU-UGC- -5'
11104 5' -51.8 NC_002794.1 + 130311 0.66 0.995287
Target:  5'- cGGCGAgauguccuggccgagACGGcGGACGAaggCGGCGAcgACGa -3'
miRNA:   3'- cUCGCU---------------UGCU-CUUGCUa--GCCGCU--UGC- -5'
11104 5' -51.8 NC_002794.1 + 116941 0.66 0.994999
Target:  5'- cGGCGuccccGGCGGcGGCG-UCGGCGGGCGc -3'
miRNA:   3'- cUCGC-----UUGCUcUUGCuAGCCGCUUGC- -5'
11104 5' -51.8 NC_002794.1 + 95780 0.66 0.994999
Target:  5'- cGGCGGccgggGCGAGAG-GcgCGGCGGAgGa -3'
miRNA:   3'- cUCGCU-----UGCUCUUgCuaGCCGCUUgC- -5'
11104 5' -51.8 NC_002794.1 + 145437 0.66 0.994999
Target:  5'- cGGCucACGAGcucGCGAgcCGGCGGACa -3'
miRNA:   3'- cUCGcuUGCUCu--UGCUa-GCCGCUUGc -5'
11104 5' -51.8 NC_002794.1 + 181224 0.66 0.994999
Target:  5'- cAGCG-ACGAGAuccgGCGA-CGGCGcGCc -3'
miRNA:   3'- cUCGCuUGCUCU----UGCUaGCCGCuUGc -5'
11104 5' -51.8 NC_002794.1 + 61887 0.66 0.994999
Target:  5'- cGGCGccgcGCGGcGAGCG--CGGCGAGCGc -3'
miRNA:   3'- cUCGCu---UGCU-CUUGCuaGCCGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.