miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11105 3' -54 NC_002794.1 + 137411 0.66 0.981608
Target:  5'- gCGUCCGCggacgCCGCGGaGACCGcGccgGCGc -3'
miRNA:   3'- -GUAGGUGa----GGUGCCgCUGGUuCa--UGC- -5'
11105 3' -54 NC_002794.1 + 193302 0.66 0.979495
Target:  5'- cCGUCCGCUCCGCGccgcacgcaGCGcCCGaucGGUuccagGCGg -3'
miRNA:   3'- -GUAGGUGAGGUGC---------CGCuGGU---UCA-----UGC- -5'
11105 3' -54 NC_002794.1 + 11583 0.66 0.979495
Target:  5'- gGUCUGCcCCGCGGUGAcgguCCAauGGUAUGc -3'
miRNA:   3'- gUAGGUGaGGUGCCGCU----GGU--UCAUGC- -5'
11105 3' -54 NC_002794.1 + 56069 0.66 0.978144
Target:  5'- -uUCCACUCCAUGaG-GGCCAGcaggccgcgcagcacGUGCGu -3'
miRNA:   3'- guAGGUGAGGUGC-CgCUGGUU---------------CAUGC- -5'
11105 3' -54 NC_002794.1 + 78421 0.66 0.977208
Target:  5'- -cUCCGCUCC-CGGCG-UCAcGGUcGCGg -3'
miRNA:   3'- guAGGUGAGGuGCCGCuGGU-UCA-UGC- -5'
11105 3' -54 NC_002794.1 + 121862 0.66 0.977208
Target:  5'- gAUCCgguguuACUgCCACGGCGAgUugggguGGGUGCGg -3'
miRNA:   3'- gUAGG------UGA-GGUGCCGCUgG------UUCAUGC- -5'
11105 3' -54 NC_002794.1 + 48917 0.66 0.977208
Target:  5'- --gCCGCUCCGCaGCGccagcGCCAGGcGCu -3'
miRNA:   3'- guaGGUGAGGUGcCGC-----UGGUUCaUGc -5'
11105 3' -54 NC_002794.1 + 33608 0.66 0.977208
Target:  5'- gCAUCCccaACUCCACGGaccugcaGAUC--GUGCGg -3'
miRNA:   3'- -GUAGG---UGAGGUGCCg------CUGGuuCAUGC- -5'
11105 3' -54 NC_002794.1 + 24182 0.66 0.974738
Target:  5'- -cUCgACcCCGCGGCaccgaGACCGAGcGCGg -3'
miRNA:   3'- guAGgUGaGGUGCCG-----CUGGUUCaUGC- -5'
11105 3' -54 NC_002794.1 + 9076 0.66 0.972078
Target:  5'- gAUCCgagACUUggagaGCGGCGACCGGGaGCa -3'
miRNA:   3'- gUAGG---UGAGg----UGCCGCUGGUUCaUGc -5'
11105 3' -54 NC_002794.1 + 125018 0.66 0.972078
Target:  5'- gGUCCGCggcggccgucaCCACGGCGcagauCCuGGUGCa -3'
miRNA:   3'- gUAGGUGa----------GGUGCCGCu----GGuUCAUGc -5'
11105 3' -54 NC_002794.1 + 22176 0.66 0.972078
Target:  5'- ---gCGCUCCACGGaCGGCCGGacucACGa -3'
miRNA:   3'- guagGUGAGGUGCC-GCUGGUUca--UGC- -5'
11105 3' -54 NC_002794.1 + 2084 0.66 0.972078
Target:  5'- --aCCGCcggCCuuauACGGCGACCGGG-GCGu -3'
miRNA:   3'- guaGGUGa--GG----UGCCGCUGGUUCaUGC- -5'
11105 3' -54 NC_002794.1 + 48869 0.66 0.972078
Target:  5'- aGUCC---CCGuCGGCGGCCAGGUGg- -3'
miRNA:   3'- gUAGGugaGGU-GCCGCUGGUUCAUgc -5'
11105 3' -54 NC_002794.1 + 99297 0.66 0.972078
Target:  5'- -uUCCGCgaCCGCcGCcACCAAGUACa -3'
miRNA:   3'- guAGGUGa-GGUGcCGcUGGUUCAUGc -5'
11105 3' -54 NC_002794.1 + 65228 0.66 0.971243
Target:  5'- -uUCCACgggcggcggucgCCGCGGCGgcgauccggccucGCCGAGcgGCGg -3'
miRNA:   3'- guAGGUGa-----------GGUGCCGC-------------UGGUUCa-UGC- -5'
11105 3' -54 NC_002794.1 + 36946 0.67 0.969223
Target:  5'- aGUCCGCgUCgCGCGGCGGCaggcAGUcGCGc -3'
miRNA:   3'- gUAGGUG-AG-GUGCCGCUGgu--UCA-UGC- -5'
11105 3' -54 NC_002794.1 + 117225 0.67 0.969223
Target:  5'- --gCCGCgUCAgGGCGACCGAcgcGUGCa -3'
miRNA:   3'- guaGGUGaGGUgCCGCUGGUU---CAUGc -5'
11105 3' -54 NC_002794.1 + 100091 0.67 0.969223
Target:  5'- -uUCCACgUCCGCGuGCGGCgCGugcagcGGUGCu -3'
miRNA:   3'- guAGGUG-AGGUGC-CGCUG-GU------UCAUGc -5'
11105 3' -54 NC_002794.1 + 115076 0.67 0.969223
Target:  5'- aGUCCACggCCuCGGCGGCCGcccGCa -3'
miRNA:   3'- gUAGGUGa-GGuGCCGCUGGUucaUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.