miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11105 3' -54 NC_002794.1 + 152574 0.67 0.951804
Target:  5'- -cUUCACcgCCGCGGCGGCCGccacgucccugcGGcGCGg -3'
miRNA:   3'- guAGGUGa-GGUGCCGCUGGU------------UCaUGC- -5'
11105 3' -54 NC_002794.1 + 105710 0.67 0.951804
Target:  5'- -cUCCGCUCgaggcgauCGCGGCGGCCGucGGgaaaGCGu -3'
miRNA:   3'- guAGGUGAG--------GUGCCGCUGGU--UCa---UGC- -5'
11105 3' -54 NC_002794.1 + 194747 0.67 0.9514
Target:  5'- --aCCGCUgcagcacCCACGGCGAcugcuCCGAGaACGg -3'
miRNA:   3'- guaGGUGA-------GGUGCCGCU-----GGUUCaUGC- -5'
11105 3' -54 NC_002794.1 + 63447 0.67 0.951804
Target:  5'- --aCCACggCCGCGGCGGCgacgaugacgaCGAGgcgGCGg -3'
miRNA:   3'- guaGGUGa-GGUGCCGCUG-----------GUUCa--UGC- -5'
11105 3' -54 NC_002794.1 + 119251 0.67 0.959421
Target:  5'- uGUCC--UCgGCGGCGGCguAGUGCu -3'
miRNA:   3'- gUAGGugAGgUGCCGCUGguUCAUGc -5'
11105 3' -54 NC_002794.1 + 185011 0.67 0.9629
Target:  5'- --cCCACgggacucagCACGGUGACCAgcuccaAGUACGg -3'
miRNA:   3'- guaGGUGag-------GUGCCGCUGGU------UCAUGC- -5'
11105 3' -54 NC_002794.1 + 36946 0.67 0.969223
Target:  5'- aGUCCGCgUCgCGCGGCGGCaggcAGUcGCGc -3'
miRNA:   3'- gUAGGUG-AG-GUGCCGCUGgu--UCA-UGC- -5'
11105 3' -54 NC_002794.1 + 117225 0.67 0.969223
Target:  5'- --gCCGCgUCAgGGCGACCGAcgcGUGCa -3'
miRNA:   3'- guaGGUGaGGUgCCGCUGGUU---CAUGc -5'
11105 3' -54 NC_002794.1 + 100091 0.67 0.969223
Target:  5'- -uUCCACgUCCGCGuGCGGCgCGugcagcGGUGCu -3'
miRNA:   3'- guAGGUG-AGGUGC-CGCUG-GU------UCAUGc -5'
11105 3' -54 NC_002794.1 + 115076 0.67 0.969223
Target:  5'- aGUCCACggCCuCGGCGGCCGcccGCa -3'
miRNA:   3'- gUAGGUGa-GGuGCCGCUGGUucaUGc -5'
11105 3' -54 NC_002794.1 + 106967 0.67 0.966165
Target:  5'- gCGUCgC-CUCgCGCGGCGGCCGGcacgGCGg -3'
miRNA:   3'- -GUAG-GuGAG-GUGCCGCUGGUUca--UGC- -5'
11105 3' -54 NC_002794.1 + 55346 0.67 0.959421
Target:  5'- gGUCgCGC-CCGaGGCGGCCGAG-GCGg -3'
miRNA:   3'- gUAG-GUGaGGUgCCGCUGGUUCaUGC- -5'
11105 3' -54 NC_002794.1 + 79655 0.67 0.966165
Target:  5'- gAUCCAgaCCACGcGCGACUAcGcGCGc -3'
miRNA:   3'- gUAGGUgaGGUGC-CGCUGGUuCaUGC- -5'
11105 3' -54 NC_002794.1 + 180687 0.67 0.966165
Target:  5'- --gCCGCUCC-CGGCGcCCGGcggGCGg -3'
miRNA:   3'- guaGGUGAGGuGCCGCuGGUUca-UGC- -5'
11105 3' -54 NC_002794.1 + 187051 0.68 0.943284
Target:  5'- aGUCCcggaGC-CCGCGGCccGCCAGGUGCc -3'
miRNA:   3'- gUAGG----UGaGGUGCCGc-UGGUUCAUGc -5'
11105 3' -54 NC_002794.1 + 184574 0.68 0.943284
Target:  5'- gCcgCCGCggCgGCGGCGGCCAcGcGCGg -3'
miRNA:   3'- -GuaGGUGa-GgUGCCGCUGGUuCaUGC- -5'
11105 3' -54 NC_002794.1 + 182027 0.68 0.943284
Target:  5'- gCGUCCGggCCGcCGGCGACCAgaccaGGUccuGCGc -3'
miRNA:   3'- -GUAGGUgaGGU-GCCGCUGGU-----UCA---UGC- -5'
11105 3' -54 NC_002794.1 + 116125 0.68 0.947659
Target:  5'- aGUCCGCcgcggcggcggCgGCGGCGGCCAGGgccUGCa -3'
miRNA:   3'- gUAGGUGa----------GgUGCCGCUGGUUC---AUGc -5'
11105 3' -54 NC_002794.1 + 100522 0.68 0.947659
Target:  5'- uUAUCCGgUCgGCGGC-ACCGAGgagcaGCGg -3'
miRNA:   3'- -GUAGGUgAGgUGCCGcUGGUUCa----UGC- -5'
11105 3' -54 NC_002794.1 + 93846 0.68 0.943284
Target:  5'- gAUCauggACggCCGCGGCGGcgagccgcCCGAGUACGa -3'
miRNA:   3'- gUAGg---UGa-GGUGCCGCU--------GGUUCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.