miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11105 3' -54 NC_002794.1 + 57476 0.8 0.371632
Target:  5'- --cCCGCUCguCACGcGCGACCAGGUGCGc -3'
miRNA:   3'- guaGGUGAG--GUGC-CGCUGGUUCAUGC- -5'
11105 3' -54 NC_002794.1 + 112223 0.74 0.664698
Target:  5'- --cCCGCUCCAgGGCGuCCAGGgcCGc -3'
miRNA:   3'- guaGGUGAGGUgCCGCuGGUUCauGC- -5'
11105 3' -54 NC_002794.1 + 188360 0.74 0.704831
Target:  5'- cCGUCCGg-CCgGCGGCGGCCGAGgGCGu -3'
miRNA:   3'- -GUAGGUgaGG-UGCCGCUGGUUCaUGC- -5'
11105 3' -54 NC_002794.1 + 181162 0.73 0.72457
Target:  5'- cCGUCCGCcgcgCCgACGGCGAacggcggacacuCCAAGUACa -3'
miRNA:   3'- -GUAGGUGa---GG-UGCCGCU------------GGUUCAUGc -5'
11105 3' -54 NC_002794.1 + 116990 0.73 0.72457
Target:  5'- uCGUUCGCcgUCCGCGGCGucucgcCCAGGUACc -3'
miRNA:   3'- -GUAGGUG--AGGUGCCGCu-----GGUUCAUGc -5'
11105 3' -54 NC_002794.1 + 16371 0.73 0.743996
Target:  5'- --cCCGCgUgCACGGCGGCCGGGUcCGa -3'
miRNA:   3'- guaGGUG-AgGUGCCGCUGGUUCAuGC- -5'
11105 3' -54 NC_002794.1 + 188589 0.73 0.747837
Target:  5'- cCcgCCGCUCCACGGCcGCCuugcgccgcagguGUGCGa -3'
miRNA:   3'- -GuaGGUGAGGUGCCGcUGGuu-----------CAUGC- -5'
11105 3' -54 NC_002794.1 + 65134 0.73 0.753569
Target:  5'- uGUCCgaGCUCCuCGGCGACUggGU-CGc -3'
miRNA:   3'- gUAGG--UGAGGuGCCGCUGGuuCAuGC- -5'
11105 3' -54 NC_002794.1 + 140095 0.72 0.772391
Target:  5'- aCGUCCAUggUCgGCGGCGAUCGAcgGCGg -3'
miRNA:   3'- -GUAGGUG--AGgUGCCGCUGGUUcaUGC- -5'
11105 3' -54 NC_002794.1 + 114809 0.72 0.789817
Target:  5'- gGUCCcggaggcccgcgcGCUCUcCGGCGGCCGAGU-CGg -3'
miRNA:   3'- gUAGG-------------UGAGGuGCCGCUGGUUCAuGC- -5'
11105 3' -54 NC_002794.1 + 107422 0.72 0.79072
Target:  5'- uGUCCuggGCUCUGCGGCG-CCucGUGCGu -3'
miRNA:   3'- gUAGG---UGAGGUGCCGCuGGuuCAUGC- -5'
11105 3' -54 NC_002794.1 + 110626 0.71 0.81714
Target:  5'- --gCCGCggcgCCGCGGCGGCgGGGU-CGg -3'
miRNA:   3'- guaGGUGa---GGUGCCGCUGgUUCAuGC- -5'
11105 3' -54 NC_002794.1 + 76331 0.71 0.825627
Target:  5'- uCGUCCuccCUCC-CGGCGGCCGGGa--- -3'
miRNA:   3'- -GUAGGu--GAGGuGCCGCUGGUUCaugc -5'
11105 3' -54 NC_002794.1 + 112750 0.71 0.825627
Target:  5'- ----uGCUCCGCGGCGGCgGGGU-CGg -3'
miRNA:   3'- guaggUGAGGUGCCGCUGgUUCAuGC- -5'
11105 3' -54 NC_002794.1 + 49012 0.71 0.825627
Target:  5'- --cCCGCgCCGCGGCGGCCGcg-GCGu -3'
miRNA:   3'- guaGGUGaGGUGCCGCUGGUucaUGC- -5'
11105 3' -54 NC_002794.1 + 104488 0.71 0.833941
Target:  5'- ----gGCggCCACGGCGGCCGGGUcggGCGa -3'
miRNA:   3'- guaggUGa-GGUGCCGCUGGUUCA---UGC- -5'
11105 3' -54 NC_002794.1 + 150840 0.71 0.842074
Target:  5'- uCGUCaGCUCCAgCGGCGGCCGcGUcuACGc -3'
miRNA:   3'- -GUAGgUGAGGU-GCCGCUGGUuCA--UGC- -5'
11105 3' -54 NC_002794.1 + 49394 0.71 0.85002
Target:  5'- gCcgCCGCcgucggCCACGGCGGCCGcGgcgGCGg -3'
miRNA:   3'- -GuaGGUGa-----GGUGCCGCUGGUuCa--UGC- -5'
11105 3' -54 NC_002794.1 + 113808 0.71 0.85002
Target:  5'- gGUCCucgcCUUCGCGGCGGcgcucggccuCCAGGUGCu -3'
miRNA:   3'- gUAGGu---GAGGUGCCGCU----------GGUUCAUGc -5'
11105 3' -54 NC_002794.1 + 127445 0.7 0.857772
Target:  5'- uCGUCCGCUCgACGGUGACUAcccccccucGGccGCGa -3'
miRNA:   3'- -GUAGGUGAGgUGCCGCUGGU---------UCa-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.