miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11105 3' -54 NC_002794.1 + 71346 0.7 0.865323
Target:  5'- uCGUCCGC-CagGCGGCGcAgCAGGUGCGg -3'
miRNA:   3'- -GUAGGUGaGg-UGCCGC-UgGUUCAUGC- -5'
11105 3' -54 NC_002794.1 + 76531 0.7 0.875546
Target:  5'- --gCCACcggCCGCGGCGccgacgcggucgcgcGCCGGGUACu -3'
miRNA:   3'- guaGGUGa--GGUGCCGC---------------UGGUUCAUGc -5'
11105 3' -54 NC_002794.1 + 180746 0.7 0.8798
Target:  5'- cCGUCCgGCUCCuCGGCGGCUucg-GCGg -3'
miRNA:   3'- -GUAGG-UGAGGuGCCGCUGGuucaUGC- -5'
11105 3' -54 NC_002794.1 + 32294 0.7 0.886716
Target:  5'- gCcgCCGCcgCCGCGGCGGCCGcgccGGccGCGg -3'
miRNA:   3'- -GuaGGUGa-GGUGCCGCUGGU----UCa-UGC- -5'
11105 3' -54 NC_002794.1 + 117726 0.69 0.899881
Target:  5'- gCGUCUGCUCCACGuaGGCCuggauGGUccGCGc -3'
miRNA:   3'- -GUAGGUGAGGUGCcgCUGGu----UCA--UGC- -5'
11105 3' -54 NC_002794.1 + 71560 0.69 0.906123
Target:  5'- --gCUGCUCCACcugGGCGAUCcGGUACa -3'
miRNA:   3'- guaGGUGAGGUG---CCGCUGGuUCAUGc -5'
11105 3' -54 NC_002794.1 + 154368 0.69 0.906123
Target:  5'- gGUCCAggCCGCGGCGGCggCGGGcACGc -3'
miRNA:   3'- gUAGGUgaGGUGCCGCUG--GUUCaUGC- -5'
11105 3' -54 NC_002794.1 + 115316 0.69 0.912134
Target:  5'- cCGUCCGCacggucgCCGCGGCGuCCGGGccGCu -3'
miRNA:   3'- -GUAGGUGa------GGUGCCGCuGGUUCa-UGc -5'
11105 3' -54 NC_002794.1 + 72123 0.69 0.914473
Target:  5'- uCAUCCugUCgcucggccaggaaaGCGGUaGCCGAGUACGc -3'
miRNA:   3'- -GUAGGugAGg-------------UGCCGcUGGUUCAUGC- -5'
11105 3' -54 NC_002794.1 + 122754 0.69 0.914473
Target:  5'- gCAUCCucgagcugaucgagcGCUCCGCGaGCGGCCucg-ACGg -3'
miRNA:   3'- -GUAGG---------------UGAGGUGC-CGCUGGuucaUGC- -5'
11105 3' -54 NC_002794.1 + 14439 0.69 0.917344
Target:  5'- gAUCUucucgauGCUCCGCgGGCGACCGuGUcgaGCGg -3'
miRNA:   3'- gUAGG-------UGAGGUG-CCGCUGGUuCA---UGC- -5'
11105 3' -54 NC_002794.1 + 93593 0.68 0.928765
Target:  5'- -uUCCACUUCG-GGCaGAUCGGGUACu -3'
miRNA:   3'- guAGGUGAGGUgCCG-CUGGUUCAUGc -5'
11105 3' -54 NC_002794.1 + 26630 0.68 0.933839
Target:  5'- cCGUCCGCgUCCgcgcacccggACGGCGGCCGGcucGUcgGCGg -3'
miRNA:   3'- -GUAGGUG-AGG----------UGCCGCUGGUU---CA--UGC- -5'
11105 3' -54 NC_002794.1 + 138200 0.68 0.933839
Target:  5'- gGUCCACgUCCACGGCuuCCGucccGCGg -3'
miRNA:   3'- gUAGGUG-AGGUGCCGcuGGUuca-UGC- -5'
11105 3' -54 NC_002794.1 + 60475 0.68 0.938205
Target:  5'- --aCUGCaUCCGCGGCGACaCGgagauccAGUACGu -3'
miRNA:   3'- guaGGUG-AGGUGCCGCUG-GU-------UCAUGC- -5'
11105 3' -54 NC_002794.1 + 120122 0.68 0.938678
Target:  5'- ---aCGCgcgCgACGGCGACCGGGgACGg -3'
miRNA:   3'- guagGUGa--GgUGCCGCUGGUUCaUGC- -5'
11105 3' -54 NC_002794.1 + 20690 0.68 0.938678
Target:  5'- cCGUCC--UCCGCGGaCGACCGGGcucgcACGa -3'
miRNA:   3'- -GUAGGugAGGUGCC-GCUGGUUCa----UGC- -5'
11105 3' -54 NC_002794.1 + 30001 0.68 0.938678
Target:  5'- --aCCAUUCCcCGGCGACCGAc---- -3'
miRNA:   3'- guaGGUGAGGuGCCGCUGGUUcaugc -5'
11105 3' -54 NC_002794.1 + 190013 0.68 0.938678
Target:  5'- cCGUCCgGgUCCAuCGGCGGCCGGuaGCGc -3'
miRNA:   3'- -GUAGG-UgAGGU-GCCGCUGGUUcaUGC- -5'
11105 3' -54 NC_002794.1 + 187051 0.68 0.943284
Target:  5'- aGUCCcggaGC-CCGCGGCccGCCAGGUGCc -3'
miRNA:   3'- gUAGG----UGaGGUGCCGc-UGGUUCAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.