miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11105 3' -54 NC_002794.1 + 57476 0.8 0.371632
Target:  5'- --cCCGCUCguCACGcGCGACCAGGUGCGc -3'
miRNA:   3'- guaGGUGAG--GUGC-CGCUGGUUCAUGC- -5'
11105 3' -54 NC_002794.1 + 60475 0.68 0.938205
Target:  5'- --aCUGCaUCCGCGGCGACaCGgagauccAGUACGu -3'
miRNA:   3'- guaGGUG-AGGUGCCGCUG-GU-------UCAUGC- -5'
11105 3' -54 NC_002794.1 + 63447 0.67 0.951804
Target:  5'- --aCCACggCCGCGGCGGCgacgaugacgaCGAGgcgGCGg -3'
miRNA:   3'- guaGGUGa-GGUGCCGCUG-----------GUUCa--UGC- -5'
11105 3' -54 NC_002794.1 + 65134 0.73 0.753569
Target:  5'- uGUCCgaGCUCCuCGGCGACUggGU-CGc -3'
miRNA:   3'- gUAGG--UGAGGuGCCGCUGGuuCAuGC- -5'
11105 3' -54 NC_002794.1 + 65228 0.66 0.971243
Target:  5'- -uUCCACgggcggcggucgCCGCGGCGgcgauccggccucGCCGAGcgGCGg -3'
miRNA:   3'- guAGGUGa-----------GGUGCCGC-------------UGGUUCa-UGC- -5'
11105 3' -54 NC_002794.1 + 71346 0.7 0.865323
Target:  5'- uCGUCCGC-CagGCGGCGcAgCAGGUGCGg -3'
miRNA:   3'- -GUAGGUGaGg-UGCCGC-UgGUUCAUGC- -5'
11105 3' -54 NC_002794.1 + 71560 0.69 0.906123
Target:  5'- --gCUGCUCCACcugGGCGAUCcGGUACa -3'
miRNA:   3'- guaGGUGAGGUG---CCGCUGGuUCAUGc -5'
11105 3' -54 NC_002794.1 + 72123 0.69 0.914473
Target:  5'- uCAUCCugUCgcucggccaggaaaGCGGUaGCCGAGUACGc -3'
miRNA:   3'- -GUAGGugAGg-------------UGCCGcUGGUUCAUGC- -5'
11105 3' -54 NC_002794.1 + 76331 0.71 0.825627
Target:  5'- uCGUCCuccCUCC-CGGCGGCCGGGa--- -3'
miRNA:   3'- -GUAGGu--GAGGuGCCGCUGGUUCaugc -5'
11105 3' -54 NC_002794.1 + 76531 0.7 0.875546
Target:  5'- --gCCACcggCCGCGGCGccgacgcggucgcgcGCCGGGUACu -3'
miRNA:   3'- guaGGUGa--GGUGCCGC---------------UGGUUCAUGc -5'
11105 3' -54 NC_002794.1 + 78421 0.66 0.977208
Target:  5'- -cUCCGCUCC-CGGCG-UCAcGGUcGCGg -3'
miRNA:   3'- guAGGUGAGGuGCCGCuGGU-UCA-UGC- -5'
11105 3' -54 NC_002794.1 + 79655 0.67 0.966165
Target:  5'- gAUCCAgaCCACGcGCGACUAcGcGCGc -3'
miRNA:   3'- gUAGGUgaGGUGC-CGCUGGUuCaUGC- -5'
11105 3' -54 NC_002794.1 + 93593 0.68 0.928765
Target:  5'- -uUCCACUUCG-GGCaGAUCGGGUACu -3'
miRNA:   3'- guAGGUGAGGUgCCG-CUGGUUCAUGc -5'
11105 3' -54 NC_002794.1 + 93846 0.68 0.943284
Target:  5'- gAUCauggACggCCGCGGCGGcgagccgcCCGAGUACGa -3'
miRNA:   3'- gUAGg---UGa-GGUGCCGCU--------GGUUCAUGC- -5'
11105 3' -54 NC_002794.1 + 99297 0.66 0.972078
Target:  5'- -uUCCGCgaCCGCcGCcACCAAGUACa -3'
miRNA:   3'- guAGGUGa-GGUGcCGcUGGUUCAUGc -5'
11105 3' -54 NC_002794.1 + 100091 0.67 0.969223
Target:  5'- -uUCCACgUCCGCGuGCGGCgCGugcagcGGUGCu -3'
miRNA:   3'- guAGGUG-AGGUGC-CGCUG-GU------UCAUGc -5'
11105 3' -54 NC_002794.1 + 100522 0.68 0.947659
Target:  5'- uUAUCCGgUCgGCGGC-ACCGAGgagcaGCGg -3'
miRNA:   3'- -GUAGGUgAGgUGCCGcUGGUUCa----UGC- -5'
11105 3' -54 NC_002794.1 + 104488 0.71 0.833941
Target:  5'- ----gGCggCCACGGCGGCCGGGUcggGCGa -3'
miRNA:   3'- guaggUGa-GGUGCCGCUGGUUCA---UGC- -5'
11105 3' -54 NC_002794.1 + 105710 0.67 0.951804
Target:  5'- -cUCCGCUCgaggcgauCGCGGCGGCCGucGGgaaaGCGu -3'
miRNA:   3'- guAGGUGAG--------GUGCCGCUGGU--UCa---UGC- -5'
11105 3' -54 NC_002794.1 + 106967 0.67 0.966165
Target:  5'- gCGUCgC-CUCgCGCGGCGGCCGGcacgGCGg -3'
miRNA:   3'- -GUAG-GuGAG-GUGCCGCUGGUUca--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.