miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11105 3' -54 NC_002794.1 + 127445 0.7 0.857772
Target:  5'- uCGUCCGCUCgACGGUGACUAcccccccucGGccGCGa -3'
miRNA:   3'- -GUAGGUGAGgUGCCGCUGGU---------UCa-UGC- -5'
11105 3' -54 NC_002794.1 + 125018 0.66 0.972078
Target:  5'- gGUCCGCggcggccgucaCCACGGCGcagauCCuGGUGCa -3'
miRNA:   3'- gUAGGUGa----------GGUGCCGCu----GGuUCAUGc -5'
11105 3' -54 NC_002794.1 + 122754 0.69 0.914473
Target:  5'- gCAUCCucgagcugaucgagcGCUCCGCGaGCGGCCucg-ACGg -3'
miRNA:   3'- -GUAGG---------------UGAGGUGC-CGCUGGuucaUGC- -5'
11105 3' -54 NC_002794.1 + 121862 0.66 0.977208
Target:  5'- gAUCCgguguuACUgCCACGGCGAgUugggguGGGUGCGg -3'
miRNA:   3'- gUAGG------UGA-GGUGCCGCUgG------UUCAUGC- -5'
11105 3' -54 NC_002794.1 + 120122 0.68 0.938678
Target:  5'- ---aCGCgcgCgACGGCGACCGGGgACGg -3'
miRNA:   3'- guagGUGa--GgUGCCGCUGGUUCaUGC- -5'
11105 3' -54 NC_002794.1 + 119251 0.67 0.959421
Target:  5'- uGUCC--UCgGCGGCGGCguAGUGCu -3'
miRNA:   3'- gUAGGugAGgUGCCGCUGguUCAUGc -5'
11105 3' -54 NC_002794.1 + 117726 0.69 0.899881
Target:  5'- gCGUCUGCUCCACGuaGGCCuggauGGUccGCGc -3'
miRNA:   3'- -GUAGGUGAGGUGCcgCUGGu----UCA--UGC- -5'
11105 3' -54 NC_002794.1 + 117225 0.67 0.969223
Target:  5'- --gCCGCgUCAgGGCGACCGAcgcGUGCa -3'
miRNA:   3'- guaGGUGaGGUgCCGCUGGUU---CAUGc -5'
11105 3' -54 NC_002794.1 + 116990 0.73 0.72457
Target:  5'- uCGUUCGCcgUCCGCGGCGucucgcCCAGGUACc -3'
miRNA:   3'- -GUAGGUG--AGGUGCCGCu-----GGUUCAUGc -5'
11105 3' -54 NC_002794.1 + 116125 0.68 0.947659
Target:  5'- aGUCCGCcgcggcggcggCgGCGGCGGCCAGGgccUGCa -3'
miRNA:   3'- gUAGGUGa----------GgUGCCGCUGGUUC---AUGc -5'
11105 3' -54 NC_002794.1 + 115316 0.69 0.912134
Target:  5'- cCGUCCGCacggucgCCGCGGCGuCCGGGccGCu -3'
miRNA:   3'- -GUAGGUGa------GGUGCCGCuGGUUCa-UGc -5'
11105 3' -54 NC_002794.1 + 115076 0.67 0.969223
Target:  5'- aGUCCACggCCuCGGCGGCCGcccGCa -3'
miRNA:   3'- gUAGGUGa-GGuGCCGCUGGUucaUGc -5'
11105 3' -54 NC_002794.1 + 114809 0.72 0.789817
Target:  5'- gGUCCcggaggcccgcgcGCUCUcCGGCGGCCGAGU-CGg -3'
miRNA:   3'- gUAGG-------------UGAGGuGCCGCUGGUUCAuGC- -5'
11105 3' -54 NC_002794.1 + 113808 0.71 0.85002
Target:  5'- gGUCCucgcCUUCGCGGCGGcgcucggccuCCAGGUGCu -3'
miRNA:   3'- gUAGGu---GAGGUGCCGCU----------GGUUCAUGc -5'
11105 3' -54 NC_002794.1 + 112819 0.67 0.955724
Target:  5'- gCGUCUGCU---CGGCcGCCGAGUACGg -3'
miRNA:   3'- -GUAGGUGAgguGCCGcUGGUUCAUGC- -5'
11105 3' -54 NC_002794.1 + 112750 0.71 0.825627
Target:  5'- ----uGCUCCGCGGCGGCgGGGU-CGg -3'
miRNA:   3'- guaggUGAGGUGCCGCUGgUUCAuGC- -5'
11105 3' -54 NC_002794.1 + 112223 0.74 0.664698
Target:  5'- --cCCGCUCCAgGGCGuCCAGGgcCGc -3'
miRNA:   3'- guaGGUGAGGUgCCGCuGGUUCauGC- -5'
11105 3' -54 NC_002794.1 + 110626 0.71 0.81714
Target:  5'- --gCCGCggcgCCGCGGCGGCgGGGU-CGg -3'
miRNA:   3'- guaGGUGa---GGUGCCGCUGgUUCAuGC- -5'
11105 3' -54 NC_002794.1 + 107856 0.67 0.951804
Target:  5'- aCGUCUaccuGCUCCACugcaucgcggaGGCGGCgcggCGGGUGCGg -3'
miRNA:   3'- -GUAGG----UGAGGUG-----------CCGCUG----GUUCAUGC- -5'
11105 3' -54 NC_002794.1 + 107422 0.72 0.79072
Target:  5'- uGUCCuggGCUCUGCGGCG-CCucGUGCGu -3'
miRNA:   3'- gUAGG---UGAGGUGCCGCuGGuuCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.