Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11105 | 3' | -54 | NC_002794.1 | + | 48917 | 0.66 | 0.977208 |
Target: 5'- --gCCGCUCCGCaGCGccagcGCCAGGcGCu -3' miRNA: 3'- guaGGUGAGGUGcCGC-----UGGUUCaUGc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 33608 | 0.66 | 0.977208 |
Target: 5'- gCAUCCccaACUCCACGGaccugcaGAUC--GUGCGg -3' miRNA: 3'- -GUAGG---UGAGGUGCCg------CUGGuuCAUGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 11583 | 0.66 | 0.979495 |
Target: 5'- gGUCUGCcCCGCGGUGAcgguCCAauGGUAUGc -3' miRNA: 3'- gUAGGUGaGGUGCCGCU----GGU--UCAUGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 193302 | 0.66 | 0.979495 |
Target: 5'- cCGUCCGCUCCGCGccgcacgcaGCGcCCGaucGGUuccagGCGg -3' miRNA: 3'- -GUAGGUGAGGUGC---------CGCuGGU---UCA-----UGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 56069 | 0.66 | 0.978144 |
Target: 5'- -uUCCACUCCAUGaG-GGCCAGcaggccgcgcagcacGUGCGu -3' miRNA: 3'- guAGGUGAGGUGC-CgCUGGUU---------------CAUGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 9076 | 0.66 | 0.972078 |
Target: 5'- gAUCCgagACUUggagaGCGGCGACCGGGaGCa -3' miRNA: 3'- gUAGG---UGAGg----UGCCGCUGGUUCaUGc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 65228 | 0.66 | 0.971243 |
Target: 5'- -uUCCACgggcggcggucgCCGCGGCGgcgauccggccucGCCGAGcgGCGg -3' miRNA: 3'- guAGGUGa-----------GGUGCCGC-------------UGGUUCa-UGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 107856 | 0.67 | 0.951804 |
Target: 5'- aCGUCUaccuGCUCCACugcaucgcggaGGCGGCgcggCGGGUGCGg -3' miRNA: 3'- -GUAGG----UGAGGUG-----------CCGCUG----GUUCAUGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 112819 | 0.67 | 0.955724 |
Target: 5'- gCGUCUGCU---CGGCcGCCGAGUACGg -3' miRNA: 3'- -GUAGGUGAgguGCCGcUGGUUCAUGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 150019 | 0.67 | 0.955724 |
Target: 5'- --cCCGCUCCGagaccCGGCcGCCGAGUGg- -3' miRNA: 3'- guaGGUGAGGU-----GCCGcUGGUUCAUgc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 119251 | 0.67 | 0.959421 |
Target: 5'- uGUCC--UCgGCGGCGGCguAGUGCu -3' miRNA: 3'- gUAGGugAGgUGCCGCUGguUCAUGc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 185011 | 0.67 | 0.9629 |
Target: 5'- --cCCACgggacucagCACGGUGACCAgcuccaAGUACGg -3' miRNA: 3'- guaGGUGag-------GUGCCGCUGGU------UCAUGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 180687 | 0.67 | 0.966165 |
Target: 5'- --gCCGCUCC-CGGCGcCCGGcggGCGg -3' miRNA: 3'- guaGGUGAGGuGCCGCuGGUUca-UGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 79655 | 0.67 | 0.966165 |
Target: 5'- gAUCCAgaCCACGcGCGACUAcGcGCGc -3' miRNA: 3'- gUAGGUgaGGUGC-CGCUGGUuCaUGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 55346 | 0.67 | 0.959421 |
Target: 5'- gGUCgCGC-CCGaGGCGGCCGAG-GCGg -3' miRNA: 3'- gUAG-GUGaGGUgCCGCUGGUUCaUGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 106967 | 0.67 | 0.966165 |
Target: 5'- gCGUCgC-CUCgCGCGGCGGCCGGcacgGCGg -3' miRNA: 3'- -GUAG-GuGAG-GUGCCGCUGGUUca--UGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 115076 | 0.67 | 0.969223 |
Target: 5'- aGUCCACggCCuCGGCGGCCGcccGCa -3' miRNA: 3'- gUAGGUGa-GGuGCCGCUGGUucaUGc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 100091 | 0.67 | 0.969223 |
Target: 5'- -uUCCACgUCCGCGuGCGGCgCGugcagcGGUGCu -3' miRNA: 3'- guAGGUG-AGGUGC-CGCUG-GU------UCAUGc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 117225 | 0.67 | 0.969223 |
Target: 5'- --gCCGCgUCAgGGCGACCGAcgcGUGCa -3' miRNA: 3'- guaGGUGaGGUgCCGCUGGUU---CAUGc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 36946 | 0.67 | 0.969223 |
Target: 5'- aGUCCGCgUCgCGCGGCGGCaggcAGUcGCGc -3' miRNA: 3'- gUAGGUG-AG-GUGCCGCUGgu--UCA-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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