Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11105 | 3' | -54 | NC_002794.1 | + | 106967 | 0.67 | 0.966165 |
Target: 5'- gCGUCgC-CUCgCGCGGCGGCCGGcacgGCGg -3' miRNA: 3'- -GUAG-GuGAG-GUGCCGCUGGUUca--UGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 115076 | 0.67 | 0.969223 |
Target: 5'- aGUCCACggCCuCGGCGGCCGcccGCa -3' miRNA: 3'- gUAGGUGa-GGuGCCGCUGGUucaUGc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 99297 | 0.66 | 0.972078 |
Target: 5'- -uUCCGCgaCCGCcGCcACCAAGUACa -3' miRNA: 3'- guAGGUGa-GGUGcCGcUGGUUCAUGc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 78421 | 0.66 | 0.977208 |
Target: 5'- -cUCCGCUCC-CGGCG-UCAcGGUcGCGg -3' miRNA: 3'- guAGGUGAGGuGCCGCuGGU-UCA-UGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 121862 | 0.66 | 0.977208 |
Target: 5'- gAUCCgguguuACUgCCACGGCGAgUugggguGGGUGCGg -3' miRNA: 3'- gUAGG------UGA-GGUGCCGCUgG------UUCAUGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 48917 | 0.66 | 0.977208 |
Target: 5'- --gCCGCUCCGCaGCGccagcGCCAGGcGCu -3' miRNA: 3'- guaGGUGAGGUGcCGC-----UGGUUCaUGc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 33608 | 0.66 | 0.977208 |
Target: 5'- gCAUCCccaACUCCACGGaccugcaGAUC--GUGCGg -3' miRNA: 3'- -GUAGG---UGAGGUGCCg------CUGGuuCAUGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 11583 | 0.66 | 0.979495 |
Target: 5'- gGUCUGCcCCGCGGUGAcgguCCAauGGUAUGc -3' miRNA: 3'- gUAGGUGaGGUGCCGCU----GGU--UCAUGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 193302 | 0.66 | 0.979495 |
Target: 5'- cCGUCCGCUCCGCGccgcacgcaGCGcCCGaucGGUuccagGCGg -3' miRNA: 3'- -GUAGGUGAGGUGC---------CGCuGGU---UCA-----UGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 56069 | 0.66 | 0.978144 |
Target: 5'- -uUCCACUCCAUGaG-GGCCAGcaggccgcgcagcacGUGCGu -3' miRNA: 3'- guAGGUGAGGUGC-CgCUGGUU---------------CAUGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 24182 | 0.66 | 0.974738 |
Target: 5'- -cUCgACcCCGCGGCaccgaGACCGAGcGCGg -3' miRNA: 3'- guAGgUGaGGUGCCG-----CUGGUUCaUGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 48869 | 0.66 | 0.972078 |
Target: 5'- aGUCC---CCGuCGGCGGCCAGGUGg- -3' miRNA: 3'- gUAGGugaGGU-GCCGCUGGUUCAUgc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 100091 | 0.67 | 0.969223 |
Target: 5'- -uUCCACgUCCGCGuGCGGCgCGugcagcGGUGCu -3' miRNA: 3'- guAGGUG-AGGUGC-CGCUG-GU------UCAUGc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 117225 | 0.67 | 0.969223 |
Target: 5'- --gCCGCgUCAgGGCGACCGAcgcGUGCa -3' miRNA: 3'- guaGGUGaGGUgCCGCUGGUU---CAUGc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 36946 | 0.67 | 0.969223 |
Target: 5'- aGUCCGCgUCgCGCGGCGGCaggcAGUcGCGc -3' miRNA: 3'- gUAGGUG-AG-GUGCCGCUGgu--UCA-UGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 65228 | 0.66 | 0.971243 |
Target: 5'- -uUCCACgggcggcggucgCCGCGGCGgcgauccggccucGCCGAGcgGCGg -3' miRNA: 3'- guAGGUGa-----------GGUGCCGC-------------UGGUUCa-UGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 9076 | 0.66 | 0.972078 |
Target: 5'- gAUCCgagACUUggagaGCGGCGACCGGGaGCa -3' miRNA: 3'- gUAGG---UGAGg----UGCCGCUGGUUCaUGc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 125018 | 0.66 | 0.972078 |
Target: 5'- gGUCCGCggcggccgucaCCACGGCGcagauCCuGGUGCa -3' miRNA: 3'- gUAGGUGa----------GGUGCCGCu----GGuUCAUGc -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 22176 | 0.66 | 0.972078 |
Target: 5'- ---gCGCUCCACGGaCGGCCGGacucACGa -3' miRNA: 3'- guagGUGAGGUGCC-GCUGGUUca--UGC- -5' |
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11105 | 3' | -54 | NC_002794.1 | + | 2084 | 0.66 | 0.972078 |
Target: 5'- --aCCGCcggCCuuauACGGCGACCGGG-GCGu -3' miRNA: 3'- guaGGUGa--GG----UGCCGCUGGUUCaUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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