miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11105 5' -55.8 NC_002794.1 + 42594 0.66 0.9418
Target:  5'- -----gGAGGgcgCGGCgGCCGgGAGCGg -3'
miRNA:   3'- caguagUUCCa--GUCGgCGGCgUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 47762 0.66 0.941341
Target:  5'- cGUgGUCGcggcacaacgcgcAGGUCgAGCgGCCGCAguacacggucucGGCGa -3'
miRNA:   3'- -CAgUAGU-------------UCCAG-UCGgCGGCGU------------UCGC- -5'
11105 5' -55.8 NC_002794.1 + 186102 0.66 0.93711
Target:  5'- uUCGUCGccGUC-GCCGCCGcCGGGUc -3'
miRNA:   3'- cAGUAGUucCAGuCGGCGGC-GUUCGc -5'
11105 5' -55.8 NC_002794.1 + 29207 0.66 0.93711
Target:  5'- -cCGUCcggcGGUCGGCgGCCGUcGGCc -3'
miRNA:   3'- caGUAGuu--CCAGUCGgCGGCGuUCGc -5'
11105 5' -55.8 NC_002794.1 + 114525 0.66 0.932187
Target:  5'- --aGUCGAGcGgCAGCCGC-GCGAGCu -3'
miRNA:   3'- cagUAGUUC-CaGUCGGCGgCGUUCGc -5'
11105 5' -55.8 NC_002794.1 + 119604 0.66 0.932187
Target:  5'- aGUCGcuccagcgccUCGAGGaacgucUCGGCCGUCGUcAGCa -3'
miRNA:   3'- -CAGU----------AGUUCC------AGUCGGCGGCGuUCGc -5'
11105 5' -55.8 NC_002794.1 + 56076 0.66 0.932187
Target:  5'- -cCAUgAGGGcCAGCagGCCGCGcAGCa -3'
miRNA:   3'- caGUAgUUCCaGUCGg-CGGCGU-UCGc -5'
11105 5' -55.8 NC_002794.1 + 34852 0.66 0.927027
Target:  5'- -gCGUCGGaG-CGGgCGCCGCGGGCGc -3'
miRNA:   3'- caGUAGUUcCaGUCgGCGGCGUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 41347 0.66 0.927027
Target:  5'- gGUCucCGGGGUCA-CCGCCGUcGGCc -3'
miRNA:   3'- -CAGuaGUUCCAGUcGGCGGCGuUCGc -5'
11105 5' -55.8 NC_002794.1 + 35491 0.66 0.921632
Target:  5'- -aCGUCGAGGaCcagcaggugguGGCCGCCGUGcccAGCGu -3'
miRNA:   3'- caGUAGUUCCaG-----------UCGGCGGCGU---UCGC- -5'
11105 5' -55.8 NC_002794.1 + 45208 0.66 0.921632
Target:  5'- -----gAGGGUCAcGCCGCCGCcgcccGGCa -3'
miRNA:   3'- caguagUUCCAGU-CGGCGGCGu----UCGc -5'
11105 5' -55.8 NC_002794.1 + 86958 0.66 0.921632
Target:  5'- -gCGUCGAcGUCcGCUGCgGCGAGCu -3'
miRNA:   3'- caGUAGUUcCAGuCGGCGgCGUUCGc -5'
11105 5' -55.8 NC_002794.1 + 104394 0.66 0.921632
Target:  5'- -aCGUCAGguGGUCGuCCGCCGC-GGCc -3'
miRNA:   3'- caGUAGUU--CCAGUcGGCGGCGuUCGc -5'
11105 5' -55.8 NC_002794.1 + 21871 0.67 0.916002
Target:  5'- gGUCcgCGAGGcCGGCCGCggggUGUccGCGg -3'
miRNA:   3'- -CAGuaGUUCCaGUCGGCG----GCGuuCGC- -5'
11105 5' -55.8 NC_002794.1 + 107101 0.67 0.916002
Target:  5'- -----gGGGGUguGUCGCUGCGAGCc -3'
miRNA:   3'- caguagUUCCAguCGGCGGCGUUCGc -5'
11105 5' -55.8 NC_002794.1 + 178020 0.67 0.916002
Target:  5'- cUCGUCGGGGUCA-CCGCCcCGauccGGCu -3'
miRNA:   3'- cAGUAGUUCCAGUcGGCGGcGU----UCGc -5'
11105 5' -55.8 NC_002794.1 + 145785 0.67 0.914267
Target:  5'- aGUCGUCcccGGcCGgcucggacgacgacGCCGCCGCcGGCGg -3'
miRNA:   3'- -CAGUAGuu-CCaGU--------------CGGCGGCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 38690 0.67 0.910137
Target:  5'- ----aCGGGGUCA-CCGCCGCGccgucgAGCGc -3'
miRNA:   3'- caguaGUUCCAGUcGGCGGCGU------UCGC- -5'
11105 5' -55.8 NC_002794.1 + 126248 0.67 0.910137
Target:  5'- aUCGUggcgcgCGAGGUCGGCgGCUgGCuGGCGg -3'
miRNA:   3'- cAGUA------GUUCCAGUCGgCGG-CGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 36800 0.67 0.904039
Target:  5'- -aCGcCGAGGUCAGgUGCUGCGAGa- -3'
miRNA:   3'- caGUaGUUCCAGUCgGCGGCGUUCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.