Results 21 - 40 of 76 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 143390 | 0.67 | 0.897711 |
Target: 5'- -----gAGGGUCAGCUGCUGCucgaccGGCGc -3' miRNA: 3'- caguagUUCCAGUCGGCGGCGu-----UCGC- -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 137595 | 0.67 | 0.904039 |
Target: 5'- ----gCGGGG--AGCCGCCGCcGGCGg -3' miRNA: 3'- caguaGUUCCagUCGGCGGCGuUCGC- -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 36800 | 0.67 | 0.904039 |
Target: 5'- -aCGcCGAGGUCAGgUGCUGCGAGa- -3' miRNA: 3'- caGUaGUUCCAGUCgGCGGCGUUCgc -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 21871 | 0.67 | 0.916002 |
Target: 5'- gGUCcgCGAGGcCGGCCGCggggUGUccGCGg -3' miRNA: 3'- -CAGuaGUUCCaGUCGGCG----GCGuuCGC- -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 107101 | 0.67 | 0.916002 |
Target: 5'- -----gGGGGUguGUCGCUGCGAGCc -3' miRNA: 3'- caguagUUCCAguCGGCGGCGUUCGc -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 178020 | 0.67 | 0.916002 |
Target: 5'- cUCGUCGGGGUCA-CCGCCcCGauccGGCu -3' miRNA: 3'- cAGUAGUUCCAGUcGGCGGcGU----UCGc -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 145785 | 0.67 | 0.914267 |
Target: 5'- aGUCGUCcccGGcCGgcucggacgacgacGCCGCCGCcGGCGg -3' miRNA: 3'- -CAGUAGuu-CCaGU--------------CGGCGGCGuUCGC- -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 38690 | 0.67 | 0.910137 |
Target: 5'- ----aCGGGGUCA-CCGCCGCGccgucgAGCGc -3' miRNA: 3'- caguaGUUCCAGUcGGCGGCGU------UCGC- -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 126248 | 0.67 | 0.910137 |
Target: 5'- aUCGUggcgcgCGAGGUCGGCgGCUgGCuGGCGg -3' miRNA: 3'- cAGUA------GUUCCAGUCGgCGG-CGuUCGC- -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 181392 | 0.67 | 0.904039 |
Target: 5'- cGUCAguUCGcccGGGcCGGCCGCCGCcaccGCc -3' miRNA: 3'- -CAGU--AGU---UCCaGUCGGCGGCGuu--CGc -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 53625 | 0.68 | 0.847266 |
Target: 5'- nGUCGgacggaCGAGGUCGGCCGa-GCcGGCGu -3' miRNA: 3'- -CAGUa-----GUUCCAGUCGGCggCGuUCGC- -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 55007 | 0.68 | 0.855097 |
Target: 5'- cUCGcCGGGcGUCcgccgccgcGCCGCCGCGAGCa -3' miRNA: 3'- cAGUaGUUC-CAGu--------CGGCGGCGUUCGc -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 146346 | 0.68 | 0.847266 |
Target: 5'- cGUCGUCGAucgcGG-CGGCCGCC-CGGGUa -3' miRNA: 3'- -CAGUAGUU----CCaGUCGGCGGcGUUCGc -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 151306 | 0.68 | 0.862729 |
Target: 5'- cGUCGUCAAGGU-GGCCaacaccauCCGCGGGUu -3' miRNA: 3'- -CAGUAGUUCCAgUCGGc-------GGCGUUCGc -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 147004 | 0.68 | 0.862729 |
Target: 5'- -aCGUCGGcGG-CGGCgGCCGCcGGCGc -3' miRNA: 3'- caGUAGUU-CCaGUCGgCGGCGuUCGC- -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 58007 | 0.68 | 0.855097 |
Target: 5'- uUCGUCGccGcCggGGCCGCCGCcGGCGa -3' miRNA: 3'- cAGUAGUucCaG--UCGGCGGCGuUCGC- -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 61814 | 0.68 | 0.870157 |
Target: 5'- cUCAUCuccGG-CGGCCGCCgGCGgccGGCGu -3' miRNA: 3'- cAGUAGuu-CCaGUCGGCGG-CGU---UCGC- -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 124408 | 0.68 | 0.877373 |
Target: 5'- gGUCGUCGGGG-C-GCCGuCCGCc-GCGg -3' miRNA: 3'- -CAGUAGUUCCaGuCGGC-GGCGuuCGC- -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 156019 | 0.68 | 0.877373 |
Target: 5'- gGUC-UCAuGGGUCgcAGCCGUCGCGucgcGCGa -3' miRNA: 3'- -CAGuAGU-UCCAG--UCGGCGGCGUu---CGC- -5' |
|||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 105766 | 0.69 | 0.822645 |
Target: 5'- uUCAUCGGGGUCGGUgGgCCGCGu-CGa -3' miRNA: 3'- cAGUAGUUCCAGUCGgC-GGCGUucGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home