miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11105 5' -55.8 NC_002794.1 + 71140 0.7 0.778306
Target:  5'- -cCGUCAgcGGGcUguGCCGCCccgGCAAGCGc -3'
miRNA:   3'- caGUAGU--UCC-AguCGGCGG---CGUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 149515 0.7 0.787466
Target:  5'- ----aCGGGGUC-GUCGCCGgGAGCGg -3'
miRNA:   3'- caguaGUUCCAGuCGGCGGCgUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 65920 0.69 0.796489
Target:  5'- cGUCGUCGccggcggcgguGGcGUCGGCggcgguauCGUCGCGAGCGg -3'
miRNA:   3'- -CAGUAGU-----------UC-CAGUCG--------GCGGCGUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 32790 0.69 0.796489
Target:  5'- cGUCAUCccGGUCGGUcuuCGCCGCGAcCGu -3'
miRNA:   3'- -CAGUAGuuCCAGUCG---GCGGCGUUcGC- -5'
11105 5' -55.8 NC_002794.1 + 34244 0.69 0.796489
Target:  5'- -gCAcgCGcGG-CuGCCGCCGCAGGCGg -3'
miRNA:   3'- caGUa-GUuCCaGuCGGCGGCGUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 148088 0.69 0.796489
Target:  5'- cUCGagCGAGGagCAGCUGCCGCucaagAAGCGa -3'
miRNA:   3'- cAGUa-GUUCCa-GUCGGCGGCG-----UUCGC- -5'
11105 5' -55.8 NC_002794.1 + 37987 0.69 0.804484
Target:  5'- --gAUCGcGGUCAGCCgggccacGCCGUAGGCc -3'
miRNA:   3'- cagUAGUuCCAGUCGG-------CGGCGUUCGc -5'
11105 5' -55.8 NC_002794.1 + 95759 0.69 0.805365
Target:  5'- cUCG-CGGGG-CGGCgGCCGCGacGGCGg -3'
miRNA:   3'- cAGUaGUUCCaGUCGgCGGCGU--UCGC- -5'
11105 5' -55.8 NC_002794.1 + 105417 0.69 0.805365
Target:  5'- cUCGgccucCAGGGUgGccGCCGCCGCGccGGCGg -3'
miRNA:   3'- cAGUa----GUUCCAgU--CGGCGGCGU--UCGC- -5'
11105 5' -55.8 NC_002794.1 + 53599 0.69 0.814086
Target:  5'- -gCGUCGGcGUCaccgGGCCGCCGCA-GCGu -3'
miRNA:   3'- caGUAGUUcCAG----UCGGCGGCGUuCGC- -5'
11105 5' -55.8 NC_002794.1 + 190350 0.69 0.814086
Target:  5'- -gCGUCAGGucGUCGGCCGCgcggCGCA-GCGg -3'
miRNA:   3'- caGUAGUUC--CAGUCGGCG----GCGUuCGC- -5'
11105 5' -55.8 NC_002794.1 + 4173 0.69 0.814086
Target:  5'- gGUCGUCGcGGUgGGUCGUCGaggcaAGGCGa -3'
miRNA:   3'- -CAGUAGUuCCAgUCGGCGGCg----UUCGC- -5'
11105 5' -55.8 NC_002794.1 + 53216 0.69 0.81753
Target:  5'- cGUCGUCGAgcGGcgaaacgguccguccUCGGcCCGCCGCGccGGCGu -3'
miRNA:   3'- -CAGUAGUU--CC---------------AGUC-GGCGGCGU--UCGC- -5'
11105 5' -55.8 NC_002794.1 + 105766 0.69 0.822645
Target:  5'- uUCAUCGGGGUCGGUgGgCCGCGu-CGa -3'
miRNA:   3'- cAGUAGUUCCAGUCGgC-GGCGUucGC- -5'
11105 5' -55.8 NC_002794.1 + 48637 0.69 0.822645
Target:  5'- -cCGUCGGGGcCcgcgAGCCGCCGCAgacucaGGCc -3'
miRNA:   3'- caGUAGUUCCaG----UCGGCGGCGU------UCGc -5'
11105 5' -55.8 NC_002794.1 + 145121 0.69 0.831033
Target:  5'- --uGUCGGGG-CAGCUcauGCUGCGGGCGc -3'
miRNA:   3'- cagUAGUUCCaGUCGG---CGGCGUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 190013 0.69 0.831033
Target:  5'- -cCGUCcGGGUCcaucGGCgGCCGguAGCGc -3'
miRNA:   3'- caGUAGuUCCAG----UCGgCGGCguUCGC- -5'
11105 5' -55.8 NC_002794.1 + 146346 0.68 0.847266
Target:  5'- cGUCGUCGAucgcGG-CGGCCGCC-CGGGUa -3'
miRNA:   3'- -CAGUAGUU----CCaGUCGGCGGcGUUCGc -5'
11105 5' -55.8 NC_002794.1 + 53625 0.68 0.847266
Target:  5'- nGUCGgacggaCGAGGUCGGCCGa-GCcGGCGu -3'
miRNA:   3'- -CAGUa-----GUUCCAGUCGGCggCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 58007 0.68 0.855097
Target:  5'- uUCGUCGccGcCggGGCCGCCGCcGGCGa -3'
miRNA:   3'- cAGUAGUucCaG--UCGGCGGCGuUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.