miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11105 5' -55.8 NC_002794.1 + 137595 0.67 0.904039
Target:  5'- ----gCGGGG--AGCCGCCGCcGGCGg -3'
miRNA:   3'- caguaGUUCCagUCGGCGGCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 36800 0.67 0.904039
Target:  5'- -aCGcCGAGGUCAGgUGCUGCGAGa- -3'
miRNA:   3'- caGUaGUUCCAGUCgGCGGCGUUCgc -5'
11105 5' -55.8 NC_002794.1 + 181392 0.67 0.904039
Target:  5'- cGUCAguUCGcccGGGcCGGCCGCCGCcaccGCc -3'
miRNA:   3'- -CAGU--AGU---UCCaGUCGGCGGCGuu--CGc -5'
11105 5' -55.8 NC_002794.1 + 143390 0.67 0.897711
Target:  5'- -----gAGGGUCAGCUGCUGCucgaccGGCGc -3'
miRNA:   3'- caguagUUCCAGUCGGCGGCGu-----UCGC- -5'
11105 5' -55.8 NC_002794.1 + 71213 0.67 0.897711
Target:  5'- cUCGUCgAAGGUCccGGCCGC-GUAguGGCGg -3'
miRNA:   3'- cAGUAG-UUCCAG--UCGGCGgCGU--UCGC- -5'
11105 5' -55.8 NC_002794.1 + 188241 0.67 0.891155
Target:  5'- cGUCGUCGAccGG-CGGCgGCgGCGguAGCGg -3'
miRNA:   3'- -CAGUAGUU--CCaGUCGgCGgCGU--UCGC- -5'
11105 5' -55.8 NC_002794.1 + 186644 0.67 0.891155
Target:  5'- -cCcgCGcGGGUCGGCCGCgCGCAccccguacacGGCGc -3'
miRNA:   3'- caGuaGU-UCCAGUCGGCG-GCGU----------UCGC- -5'
11105 5' -55.8 NC_002794.1 + 44860 0.67 0.891155
Target:  5'- cGUCGUCGAGccgCAGaCGCUGCAAcucGCGg -3'
miRNA:   3'- -CAGUAGUUCca-GUCgGCGGCGUU---CGC- -5'
11105 5' -55.8 NC_002794.1 + 66818 0.67 0.890487
Target:  5'- aUCGUCAGGGcgcccggcgcgacUCcgggcGCCGCCGUcGGCGc -3'
miRNA:   3'- cAGUAGUUCC-------------AGu----CGGCGGCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 105213 0.67 0.884374
Target:  5'- gGUgAUCAGGGUCgacagGGCCGUgCGC-GGCGc -3'
miRNA:   3'- -CAgUAGUUCCAG-----UCGGCG-GCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 124408 0.68 0.877373
Target:  5'- gGUCGUCGGGG-C-GCCGuCCGCc-GCGg -3'
miRNA:   3'- -CAGUAGUUCCaGuCGGC-GGCGuuCGC- -5'
11105 5' -55.8 NC_002794.1 + 156019 0.68 0.877373
Target:  5'- gGUC-UCAuGGGUCgcAGCCGUCGCGucgcGCGa -3'
miRNA:   3'- -CAGuAGU-UCCAG--UCGGCGGCGUu---CGC- -5'
11105 5' -55.8 NC_002794.1 + 61814 0.68 0.870157
Target:  5'- cUCAUCuccGG-CGGCCGCCgGCGgccGGCGu -3'
miRNA:   3'- cAGUAGuu-CCaGUCGGCGG-CGU---UCGC- -5'
11105 5' -55.8 NC_002794.1 + 147004 0.68 0.862729
Target:  5'- -aCGUCGGcGG-CGGCgGCCGCcGGCGc -3'
miRNA:   3'- caGUAGUU-CCaGUCGgCGGCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 151306 0.68 0.862729
Target:  5'- cGUCGUCAAGGU-GGCCaacaccauCCGCGGGUu -3'
miRNA:   3'- -CAGUAGUUCCAgUCGGc-------GGCGUUCGc -5'
11105 5' -55.8 NC_002794.1 + 58007 0.68 0.855097
Target:  5'- uUCGUCGccGcCggGGCCGCCGCcGGCGa -3'
miRNA:   3'- cAGUAGUucCaG--UCGGCGGCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 55007 0.68 0.855097
Target:  5'- cUCGcCGGGcGUCcgccgccgcGCCGCCGCGAGCa -3'
miRNA:   3'- cAGUaGUUC-CAGu--------CGGCGGCGUUCGc -5'
11105 5' -55.8 NC_002794.1 + 146346 0.68 0.847266
Target:  5'- cGUCGUCGAucgcGG-CGGCCGCC-CGGGUa -3'
miRNA:   3'- -CAGUAGUU----CCaGUCGGCGGcGUUCGc -5'
11105 5' -55.8 NC_002794.1 + 53625 0.68 0.847266
Target:  5'- nGUCGgacggaCGAGGUCGGCCGa-GCcGGCGu -3'
miRNA:   3'- -CAGUa-----GUUCCAGUCGGCggCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 190013 0.69 0.831033
Target:  5'- -cCGUCcGGGUCcaucGGCgGCCGguAGCGc -3'
miRNA:   3'- caGUAGuUCCAG----UCGgCGGCguUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.