Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 145121 | 0.69 | 0.831033 |
Target: 5'- --uGUCGGGG-CAGCUcauGCUGCGGGCGc -3' miRNA: 3'- cagUAGUUCCaGUCGG---CGGCGUUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 105766 | 0.69 | 0.822645 |
Target: 5'- uUCAUCGGGGUCGGUgGgCCGCGu-CGa -3' miRNA: 3'- cAGUAGUUCCAGUCGgC-GGCGUucGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 48637 | 0.69 | 0.822645 |
Target: 5'- -cCGUCGGGGcCcgcgAGCCGCCGCAgacucaGGCc -3' miRNA: 3'- caGUAGUUCCaG----UCGGCGGCGU------UCGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 53216 | 0.69 | 0.81753 |
Target: 5'- cGUCGUCGAgcGGcgaaacgguccguccUCGGcCCGCCGCGccGGCGu -3' miRNA: 3'- -CAGUAGUU--CC---------------AGUC-GGCGGCGU--UCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 190350 | 0.69 | 0.814086 |
Target: 5'- -gCGUCAGGucGUCGGCCGCgcggCGCA-GCGg -3' miRNA: 3'- caGUAGUUC--CAGUCGGCG----GCGUuCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 53599 | 0.69 | 0.814086 |
Target: 5'- -gCGUCGGcGUCaccgGGCCGCCGCA-GCGu -3' miRNA: 3'- caGUAGUUcCAG----UCGGCGGCGUuCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 4173 | 0.69 | 0.814086 |
Target: 5'- gGUCGUCGcGGUgGGUCGUCGaggcaAGGCGa -3' miRNA: 3'- -CAGUAGUuCCAgUCGGCGGCg----UUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 95759 | 0.69 | 0.805365 |
Target: 5'- cUCG-CGGGG-CGGCgGCCGCGacGGCGg -3' miRNA: 3'- cAGUaGUUCCaGUCGgCGGCGU--UCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 105417 | 0.69 | 0.805365 |
Target: 5'- cUCGgccucCAGGGUgGccGCCGCCGCGccGGCGg -3' miRNA: 3'- cAGUa----GUUCCAgU--CGGCGGCGU--UCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 37987 | 0.69 | 0.804484 |
Target: 5'- --gAUCGcGGUCAGCCgggccacGCCGUAGGCc -3' miRNA: 3'- cagUAGUuCCAGUCGG-------CGGCGUUCGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 65920 | 0.69 | 0.796489 |
Target: 5'- cGUCGUCGccggcggcgguGGcGUCGGCggcgguauCGUCGCGAGCGg -3' miRNA: 3'- -CAGUAGU-----------UC-CAGUCG--------GCGGCGUUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 32790 | 0.69 | 0.796489 |
Target: 5'- cGUCAUCccGGUCGGUcuuCGCCGCGAcCGu -3' miRNA: 3'- -CAGUAGuuCCAGUCG---GCGGCGUUcGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 34244 | 0.69 | 0.796489 |
Target: 5'- -gCAcgCGcGG-CuGCCGCCGCAGGCGg -3' miRNA: 3'- caGUa-GUuCCaGuCGGCGGCGUUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 148088 | 0.69 | 0.796489 |
Target: 5'- cUCGagCGAGGagCAGCUGCCGCucaagAAGCGa -3' miRNA: 3'- cAGUa-GUUCCa-GUCGGCGGCG-----UUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 149515 | 0.7 | 0.787466 |
Target: 5'- ----aCGGGGUC-GUCGCCGgGAGCGg -3' miRNA: 3'- caguaGUUCCAGuCGGCGGCgUUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 71140 | 0.7 | 0.778306 |
Target: 5'- -cCGUCAgcGGGcUguGCCGCCccgGCAAGCGc -3' miRNA: 3'- caGUAGU--UCC-AguCGGCGG---CGUUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 55971 | 0.7 | 0.769016 |
Target: 5'- --aGUCGAGGUggaUGGCguaGCCGCGGGCGa -3' miRNA: 3'- cagUAGUUCCA---GUCGg--CGGCGUUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 185339 | 0.7 | 0.759606 |
Target: 5'- -gCGUCGAccGcUCGcgcGCCGCCGCGAGCGg -3' miRNA: 3'- caGUAGUU--CcAGU---CGGCGGCGUUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 70662 | 0.7 | 0.750086 |
Target: 5'- cUCGUgCGcGG-CGGCCGCCGC-GGCGg -3' miRNA: 3'- cAGUA-GUuCCaGUCGGCGGCGuUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 49451 | 0.7 | 0.747209 |
Target: 5'- gGUCGUCGccGUggcgccgccgugacCGGCCGCCGCGGGUc -3' miRNA: 3'- -CAGUAGUucCA--------------GUCGGCGGCGUUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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