miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11105 5' -55.8 NC_002794.1 + 58413 0.7 0.740462
Target:  5'- -aCGcCAAGGUgCGGCCGCCGCcAGaCGc -3'
miRNA:   3'- caGUaGUUCCA-GUCGGCGGCGuUC-GC- -5'
11105 5' -55.8 NC_002794.1 + 105485 0.71 0.723894
Target:  5'- cGUCGUCuccGGUCGuggagccGCCGCCGCcggucgcgccguccgAAGCGg -3'
miRNA:   3'- -CAGUAGuu-CCAGU-------CGGCGGCG---------------UUCGC- -5'
11105 5' -55.8 NC_002794.1 + 118659 0.71 0.71107
Target:  5'- cUCGUCcguGGGcgcgacgcccgCGGCCGCCGCcGGCGg -3'
miRNA:   3'- cAGUAGu--UCCa----------GUCGGCGGCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 121208 0.71 0.71107
Target:  5'- gGUCGacuUCGGGGgCGGCCGCCGCc-GCu -3'
miRNA:   3'- -CAGU---AGUUCCaGUCGGCGGCGuuCGc -5'
11105 5' -55.8 NC_002794.1 + 138403 0.71 0.701128
Target:  5'- -gCGUCGAGGUCgucgccGGCCGCCGacucguCGAGCc -3'
miRNA:   3'- caGUAGUUCCAG------UCGGCGGC------GUUCGc -5'
11105 5' -55.8 NC_002794.1 + 48470 0.72 0.670994
Target:  5'- -aCGUCAGGGcgaAGCCGCCGgGcAGCGc -3'
miRNA:   3'- caGUAGUUCCag-UCGGCGGCgU-UCGC- -5'
11105 5' -55.8 NC_002794.1 + 106059 0.73 0.620255
Target:  5'- uUCGUCAAcGUgGGCCGCCgGCAcGCGg -3'
miRNA:   3'- cAGUAGUUcCAgUCGGCGG-CGUuCGC- -5'
11105 5' -55.8 NC_002794.1 + 137355 0.73 0.619239
Target:  5'- cGUCGUCGGGGUCuucuucgAGCCGg-GCGAGCGc -3'
miRNA:   3'- -CAGUAGUUCCAG-------UCGGCggCGUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 146978 0.73 0.610103
Target:  5'- uGUCG-CGAGGUCGG-CGCCGCcGGCc -3'
miRNA:   3'- -CAGUaGUUCCAGUCgGCGGCGuUCGc -5'
11105 5' -55.8 NC_002794.1 + 124465 0.73 0.579772
Target:  5'- cGUCGUCGGcGUC-GCCGCCGCAcGCc -3'
miRNA:   3'- -CAGUAGUUcCAGuCGGCGGCGUuCGc -5'
11105 5' -55.8 NC_002794.1 + 188316 0.74 0.549772
Target:  5'- cGUCGUCGucGUCcucgucGCCGCCGCcGGCGg -3'
miRNA:   3'- -CAGUAGUucCAGu-----CGGCGGCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 133991 0.74 0.539875
Target:  5'- cUCGaaGAGGUCGGUCGCCggguGCGAGCGc -3'
miRNA:   3'- cAGUagUUCCAGUCGGCGG----CGUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 113920 0.75 0.510571
Target:  5'- ---cUCcAGGUCGGCCGCCG-AGGCGa -3'
miRNA:   3'- caguAGuUCCAGUCGGCGGCgUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 49507 0.75 0.498078
Target:  5'- cGUCGUCGcucgccggguacauGGGUUcGCgCGCCGCGAGCa -3'
miRNA:   3'- -CAGUAGU--------------UCCAGuCG-GCGGCGUUCGc -5'
11105 5' -55.8 NC_002794.1 + 107342 0.76 0.418441
Target:  5'- --gGUCcguGGGUcCGGUCGCCGCGAGCGa -3'
miRNA:   3'- cagUAGu--UCCA-GUCGGCGGCGUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 116108 0.78 0.337146
Target:  5'- gGUCgagGUCGAGGUCgAGuCCGCCGCGgcGGCGg -3'
miRNA:   3'- -CAG---UAGUUCCAG-UC-GGCGGCGU--UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.