miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11105 5' -55.8 NC_002794.1 + 53216 0.69 0.81753
Target:  5'- cGUCGUCGAgcGGcgaaacgguccguccUCGGcCCGCCGCGccGGCGu -3'
miRNA:   3'- -CAGUAGUU--CC---------------AGUC-GGCGGCGU--UCGC- -5'
11105 5' -55.8 NC_002794.1 + 53599 0.69 0.814086
Target:  5'- -gCGUCGGcGUCaccgGGCCGCCGCA-GCGu -3'
miRNA:   3'- caGUAGUUcCAG----UCGGCGGCGUuCGC- -5'
11105 5' -55.8 NC_002794.1 + 53625 0.68 0.847266
Target:  5'- nGUCGgacggaCGAGGUCGGCCGa-GCcGGCGu -3'
miRNA:   3'- -CAGUa-----GUUCCAGUCGGCggCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 55007 0.68 0.855097
Target:  5'- cUCGcCGGGcGUCcgccgccgcGCCGCCGCGAGCa -3'
miRNA:   3'- cAGUaGUUC-CAGu--------CGGCGGCGUUCGc -5'
11105 5' -55.8 NC_002794.1 + 55971 0.7 0.769016
Target:  5'- --aGUCGAGGUggaUGGCguaGCCGCGGGCGa -3'
miRNA:   3'- cagUAGUUCCA---GUCGg--CGGCGUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 56076 0.66 0.932187
Target:  5'- -cCAUgAGGGcCAGCagGCCGCGcAGCa -3'
miRNA:   3'- caGUAgUUCCaGUCGg-CGGCGU-UCGc -5'
11105 5' -55.8 NC_002794.1 + 58007 0.68 0.855097
Target:  5'- uUCGUCGccGcCggGGCCGCCGCcGGCGa -3'
miRNA:   3'- cAGUAGUucCaG--UCGGCGGCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 58413 0.7 0.740462
Target:  5'- -aCGcCAAGGUgCGGCCGCCGCcAGaCGc -3'
miRNA:   3'- caGUaGUUCCA-GUCGGCGGCGuUC-GC- -5'
11105 5' -55.8 NC_002794.1 + 61814 0.68 0.870157
Target:  5'- cUCAUCuccGG-CGGCCGCCgGCGgccGGCGu -3'
miRNA:   3'- cAGUAGuu-CCaGUCGGCGG-CGU---UCGC- -5'
11105 5' -55.8 NC_002794.1 + 65920 0.69 0.796489
Target:  5'- cGUCGUCGccggcggcgguGGcGUCGGCggcgguauCGUCGCGAGCGg -3'
miRNA:   3'- -CAGUAGU-----------UC-CAGUCG--------GCGGCGUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 66818 0.67 0.890487
Target:  5'- aUCGUCAGGGcgcccggcgcgacUCcgggcGCCGCCGUcGGCGc -3'
miRNA:   3'- cAGUAGUUCC-------------AGu----CGGCGGCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 70662 0.7 0.750086
Target:  5'- cUCGUgCGcGG-CGGCCGCCGC-GGCGg -3'
miRNA:   3'- cAGUA-GUuCCaGUCGGCGGCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 71140 0.7 0.778306
Target:  5'- -cCGUCAgcGGGcUguGCCGCCccgGCAAGCGc -3'
miRNA:   3'- caGUAGU--UCC-AguCGGCGG---CGUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 71213 0.67 0.897711
Target:  5'- cUCGUCgAAGGUCccGGCCGC-GUAguGGCGg -3'
miRNA:   3'- cAGUAG-UUCCAG--UCGGCGgCGU--UCGC- -5'
11105 5' -55.8 NC_002794.1 + 86958 0.66 0.921632
Target:  5'- -gCGUCGAcGUCcGCUGCgGCGAGCu -3'
miRNA:   3'- caGUAGUUcCAGuCGGCGgCGUUCGc -5'
11105 5' -55.8 NC_002794.1 + 95759 0.69 0.805365
Target:  5'- cUCG-CGGGG-CGGCgGCCGCGacGGCGg -3'
miRNA:   3'- cAGUaGUUCCaGUCGgCGGCGU--UCGC- -5'
11105 5' -55.8 NC_002794.1 + 104394 0.66 0.921632
Target:  5'- -aCGUCAGguGGUCGuCCGCCGC-GGCc -3'
miRNA:   3'- caGUAGUU--CCAGUcGGCGGCGuUCGc -5'
11105 5' -55.8 NC_002794.1 + 105213 0.67 0.884374
Target:  5'- gGUgAUCAGGGUCgacagGGCCGUgCGC-GGCGc -3'
miRNA:   3'- -CAgUAGUUCCAG-----UCGGCG-GCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 105417 0.69 0.805365
Target:  5'- cUCGgccucCAGGGUgGccGCCGCCGCGccGGCGg -3'
miRNA:   3'- cAGUa----GUUCCAgU--CGGCGGCGU--UCGC- -5'
11105 5' -55.8 NC_002794.1 + 105485 0.71 0.723894
Target:  5'- cGUCGUCuccGGUCGuggagccGCCGCCGCcggucgcgccguccgAAGCGg -3'
miRNA:   3'- -CAGUAGuu-CCAGU-------CGGCGGCG---------------UUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.