miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11105 5' -55.8 NC_002794.1 + 146346 0.68 0.847266
Target:  5'- cGUCGUCGAucgcGG-CGGCCGCC-CGGGUa -3'
miRNA:   3'- -CAGUAGUU----CCaGUCGGCGGcGUUCGc -5'
11105 5' -55.8 NC_002794.1 + 146978 0.73 0.610103
Target:  5'- uGUCG-CGAGGUCGG-CGCCGCcGGCc -3'
miRNA:   3'- -CAGUaGUUCCAGUCgGCGGCGuUCGc -5'
11105 5' -55.8 NC_002794.1 + 147004 0.68 0.862729
Target:  5'- -aCGUCGGcGG-CGGCgGCCGCcGGCGc -3'
miRNA:   3'- caGUAGUU-CCaGUCGgCGGCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 148088 0.69 0.796489
Target:  5'- cUCGagCGAGGagCAGCUGCCGCucaagAAGCGa -3'
miRNA:   3'- cAGUa-GUUCCa-GUCGGCGGCG-----UUCGC- -5'
11105 5' -55.8 NC_002794.1 + 149515 0.7 0.787466
Target:  5'- ----aCGGGGUC-GUCGCCGgGAGCGg -3'
miRNA:   3'- caguaGUUCCAGuCGGCGGCgUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 151306 0.68 0.862729
Target:  5'- cGUCGUCAAGGU-GGCCaacaccauCCGCGGGUu -3'
miRNA:   3'- -CAGUAGUUCCAgUCGGc-------GGCGUUCGc -5'
11105 5' -55.8 NC_002794.1 + 156019 0.68 0.877373
Target:  5'- gGUC-UCAuGGGUCgcAGCCGUCGCGucgcGCGa -3'
miRNA:   3'- -CAGuAGU-UCCAG--UCGGCGGCGUu---CGC- -5'
11105 5' -55.8 NC_002794.1 + 178020 0.67 0.916002
Target:  5'- cUCGUCGGGGUCA-CCGCCcCGauccGGCu -3'
miRNA:   3'- cAGUAGUUCCAGUcGGCGGcGU----UCGc -5'
11105 5' -55.8 NC_002794.1 + 181392 0.67 0.904039
Target:  5'- cGUCAguUCGcccGGGcCGGCCGCCGCcaccGCc -3'
miRNA:   3'- -CAGU--AGU---UCCaGUCGGCGGCGuu--CGc -5'
11105 5' -55.8 NC_002794.1 + 185339 0.7 0.759606
Target:  5'- -gCGUCGAccGcUCGcgcGCCGCCGCGAGCGg -3'
miRNA:   3'- caGUAGUU--CcAGU---CGGCGGCGUUCGC- -5'
11105 5' -55.8 NC_002794.1 + 186102 0.66 0.93711
Target:  5'- uUCGUCGccGUC-GCCGCCGcCGGGUc -3'
miRNA:   3'- cAGUAGUucCAGuCGGCGGC-GUUCGc -5'
11105 5' -55.8 NC_002794.1 + 186644 0.67 0.891155
Target:  5'- -cCcgCGcGGGUCGGCCGCgCGCAccccguacacGGCGc -3'
miRNA:   3'- caGuaGU-UCCAGUCGGCG-GCGU----------UCGC- -5'
11105 5' -55.8 NC_002794.1 + 188241 0.67 0.891155
Target:  5'- cGUCGUCGAccGG-CGGCgGCgGCGguAGCGg -3'
miRNA:   3'- -CAGUAGUU--CCaGUCGgCGgCGU--UCGC- -5'
11105 5' -55.8 NC_002794.1 + 188316 0.74 0.549772
Target:  5'- cGUCGUCGucGUCcucgucGCCGCCGCcGGCGg -3'
miRNA:   3'- -CAGUAGUucCAGu-----CGGCGGCGuUCGC- -5'
11105 5' -55.8 NC_002794.1 + 190013 0.69 0.831033
Target:  5'- -cCGUCcGGGUCcaucGGCgGCCGguAGCGc -3'
miRNA:   3'- caGUAGuUCCAG----UCGgCGGCguUCGC- -5'
11105 5' -55.8 NC_002794.1 + 190350 0.69 0.814086
Target:  5'- -gCGUCAGGucGUCGGCCGCgcggCGCA-GCGg -3'
miRNA:   3'- caGUAGUUC--CAGUCGGCG----GCGUuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.