Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 137595 | 0.67 | 0.904039 |
Target: 5'- ----gCGGGG--AGCCGCCGCcGGCGg -3' miRNA: 3'- caguaGUUCCagUCGGCGGCGuUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 137355 | 0.73 | 0.619239 |
Target: 5'- cGUCGUCGGGGUCuucuucgAGCCGg-GCGAGCGc -3' miRNA: 3'- -CAGUAGUUCCAG-------UCGGCggCGUUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 133991 | 0.74 | 0.539875 |
Target: 5'- cUCGaaGAGGUCGGUCGCCggguGCGAGCGc -3' miRNA: 3'- cAGUagUUCCAGUCGGCGG----CGUUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 126248 | 0.67 | 0.910137 |
Target: 5'- aUCGUggcgcgCGAGGUCGGCgGCUgGCuGGCGg -3' miRNA: 3'- cAGUA------GUUCCAGUCGgCGG-CGuUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 124465 | 0.73 | 0.579772 |
Target: 5'- cGUCGUCGGcGUC-GCCGCCGCAcGCc -3' miRNA: 3'- -CAGUAGUUcCAGuCGGCGGCGUuCGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 124408 | 0.68 | 0.877373 |
Target: 5'- gGUCGUCGGGG-C-GCCGuCCGCc-GCGg -3' miRNA: 3'- -CAGUAGUUCCaGuCGGC-GGCGuuCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 121208 | 0.71 | 0.71107 |
Target: 5'- gGUCGacuUCGGGGgCGGCCGCCGCc-GCu -3' miRNA: 3'- -CAGU---AGUUCCaGUCGGCGGCGuuCGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 119604 | 0.66 | 0.932187 |
Target: 5'- aGUCGcuccagcgccUCGAGGaacgucUCGGCCGUCGUcAGCa -3' miRNA: 3'- -CAGU----------AGUUCC------AGUCGGCGGCGuUCGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 118659 | 0.71 | 0.71107 |
Target: 5'- cUCGUCcguGGGcgcgacgcccgCGGCCGCCGCcGGCGg -3' miRNA: 3'- cAGUAGu--UCCa----------GUCGGCGGCGuUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 116108 | 0.78 | 0.337146 |
Target: 5'- gGUCgagGUCGAGGUCgAGuCCGCCGCGgcGGCGg -3' miRNA: 3'- -CAG---UAGUUCCAG-UC-GGCGGCGU--UCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 114525 | 0.66 | 0.932187 |
Target: 5'- --aGUCGAGcGgCAGCCGC-GCGAGCu -3' miRNA: 3'- cagUAGUUC-CaGUCGGCGgCGUUCGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 113920 | 0.75 | 0.510571 |
Target: 5'- ---cUCcAGGUCGGCCGCCG-AGGCGa -3' miRNA: 3'- caguAGuUCCAGUCGGCGGCgUUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 107342 | 0.76 | 0.418441 |
Target: 5'- --gGUCcguGGGUcCGGUCGCCGCGAGCGa -3' miRNA: 3'- cagUAGu--UCCA-GUCGGCGGCGUUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 107101 | 0.67 | 0.916002 |
Target: 5'- -----gGGGGUguGUCGCUGCGAGCc -3' miRNA: 3'- caguagUUCCAguCGGCGGCGUUCGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 106059 | 0.73 | 0.620255 |
Target: 5'- uUCGUCAAcGUgGGCCGCCgGCAcGCGg -3' miRNA: 3'- cAGUAGUUcCAgUCGGCGG-CGUuCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 105766 | 0.69 | 0.822645 |
Target: 5'- uUCAUCGGGGUCGGUgGgCCGCGu-CGa -3' miRNA: 3'- cAGUAGUUCCAGUCGgC-GGCGUucGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 105485 | 0.71 | 0.723894 |
Target: 5'- cGUCGUCuccGGUCGuggagccGCCGCCGCcggucgcgccguccgAAGCGg -3' miRNA: 3'- -CAGUAGuu-CCAGU-------CGGCGGCG---------------UUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 105417 | 0.69 | 0.805365 |
Target: 5'- cUCGgccucCAGGGUgGccGCCGCCGCGccGGCGg -3' miRNA: 3'- cAGUa----GUUCCAgU--CGGCGGCGU--UCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 105213 | 0.67 | 0.884374 |
Target: 5'- gGUgAUCAGGGUCgacagGGCCGUgCGC-GGCGc -3' miRNA: 3'- -CAgUAGUUCCAG-----UCGGCG-GCGuUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 104394 | 0.66 | 0.921632 |
Target: 5'- -aCGUCAGguGGUCGuCCGCCGC-GGCc -3' miRNA: 3'- caGUAGUU--CCAGUcGGCGGCGuUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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