Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11105 | 5' | -55.8 | NC_002794.1 | + | 119604 | 0.66 | 0.932187 |
Target: 5'- aGUCGcuccagcgccUCGAGGaacgucUCGGCCGUCGUcAGCa -3' miRNA: 3'- -CAGU----------AGUUCC------AGUCGGCGGCGuUCGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 56076 | 0.66 | 0.932187 |
Target: 5'- -cCAUgAGGGcCAGCagGCCGCGcAGCa -3' miRNA: 3'- caGUAgUUCCaGUCGg-CGGCGU-UCGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 29207 | 0.66 | 0.93711 |
Target: 5'- -cCGUCcggcGGUCGGCgGCCGUcGGCc -3' miRNA: 3'- caGUAGuu--CCAGUCGgCGGCGuUCGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 186102 | 0.66 | 0.93711 |
Target: 5'- uUCGUCGccGUC-GCCGCCGcCGGGUc -3' miRNA: 3'- cAGUAGUucCAGuCGGCGGC-GUUCGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 42594 | 0.66 | 0.9418 |
Target: 5'- -----gGAGGgcgCGGCgGCCGgGAGCGg -3' miRNA: 3'- caguagUUCCa--GUCGgCGGCgUUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 178020 | 0.67 | 0.916002 |
Target: 5'- cUCGUCGGGGUCA-CCGCCcCGauccGGCu -3' miRNA: 3'- cAGUAGUUCCAGUcGGCGGcGU----UCGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 35491 | 0.66 | 0.921632 |
Target: 5'- -aCGUCGAGGaCcagcaggugguGGCCGCCGUGcccAGCGu -3' miRNA: 3'- caGUAGUUCCaG-----------UCGGCGGCGU---UCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 186644 | 0.67 | 0.891155 |
Target: 5'- -cCcgCGcGGGUCGGCCGCgCGCAccccguacacGGCGc -3' miRNA: 3'- caGuaGU-UCCAGUCGGCG-GCGU----------UCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 44860 | 0.67 | 0.891155 |
Target: 5'- cGUCGUCGAGccgCAGaCGCUGCAAcucGCGg -3' miRNA: 3'- -CAGUAGUUCca-GUCgGCGGCGUU---CGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 66818 | 0.67 | 0.890487 |
Target: 5'- aUCGUCAGGGcgcccggcgcgacUCcgggcGCCGCCGUcGGCGc -3' miRNA: 3'- cAGUAGUUCC-------------AGu----CGGCGGCGuUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 188241 | 0.67 | 0.891155 |
Target: 5'- cGUCGUCGAccGG-CGGCgGCgGCGguAGCGg -3' miRNA: 3'- -CAGUAGUU--CCaGUCGgCGgCGU--UCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 40409 | 0.67 | 0.904039 |
Target: 5'- gGUCG-CGGGGUCGGCCGgCGacucuGCa -3' miRNA: 3'- -CAGUaGUUCCAGUCGGCgGCguu--CGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 71213 | 0.67 | 0.897711 |
Target: 5'- cUCGUCgAAGGUCccGGCCGC-GUAguGGCGg -3' miRNA: 3'- cAGUAG-UUCCAG--UCGGCGgCGU--UCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 143390 | 0.67 | 0.897711 |
Target: 5'- -----gAGGGUCAGCUGCUGCucgaccGGCGc -3' miRNA: 3'- caguagUUCCAGUCGGCGGCGu-----UCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 137595 | 0.67 | 0.904039 |
Target: 5'- ----gCGGGG--AGCCGCCGCcGGCGg -3' miRNA: 3'- caguaGUUCCagUCGGCGGCGuUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 36800 | 0.67 | 0.904039 |
Target: 5'- -aCGcCGAGGUCAGgUGCUGCGAGa- -3' miRNA: 3'- caGUaGUUCCAGUCgGCGGCGUUCgc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 181392 | 0.67 | 0.904039 |
Target: 5'- cGUCAguUCGcccGGGcCGGCCGCCGCcaccGCc -3' miRNA: 3'- -CAGU--AGU---UCCaGUCGGCGGCGuu--CGc -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 126248 | 0.67 | 0.910137 |
Target: 5'- aUCGUggcgcgCGAGGUCGGCgGCUgGCuGGCGg -3' miRNA: 3'- cAGUA------GUUCCAGUCGgCGG-CGuUCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 38690 | 0.67 | 0.910137 |
Target: 5'- ----aCGGGGUCA-CCGCCGCGccgucgAGCGc -3' miRNA: 3'- caguaGUUCCAGUcGGCGGCGU------UCGC- -5' |
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11105 | 5' | -55.8 | NC_002794.1 | + | 145785 | 0.67 | 0.914267 |
Target: 5'- aGUCGUCcccGGcCGgcucggacgacgacGCCGCCGCcGGCGg -3' miRNA: 3'- -CAGUAGuu-CCaGU--------------CGGCGGCGuUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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