miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11106 3' -53.8 NC_002794.1 + 91122 0.66 0.976281
Target:  5'- ---gCUGGUGCCGUGcGUgGaggaggcgcggacggUGCUGCu -3'
miRNA:   3'- agaaGACCAUGGCGCuCAgC---------------ACGACG- -5'
11106 3' -53.8 NC_002794.1 + 95752 0.66 0.975283
Target:  5'- ---gCUGGUACuCGCGGGgCGgcgGCcGCg -3'
miRNA:   3'- agaaGACCAUG-GCGCUCaGCa--CGaCG- -5'
11106 3' -53.8 NC_002794.1 + 687 0.66 0.975283
Target:  5'- uUCUUCgcg-GCCG-GAGUCG-GCUGUu -3'
miRNA:   3'- -AGAAGaccaUGGCgCUCAGCaCGACG- -5'
11106 3' -53.8 NC_002794.1 + 23013 0.67 0.969831
Target:  5'- gUCUUCgugaGGUccguccccgGCC-CGAGgccacaCGUGCUGCa -3'
miRNA:   3'- -AGAAGa---CCA---------UGGcGCUCa-----GCACGACG- -5'
11106 3' -53.8 NC_002794.1 + 42218 0.67 0.966805
Target:  5'- gUCUgccgCUGGaucaGCCGCGAGaCG-GCgGCg -3'
miRNA:   3'- -AGAa---GACCa---UGGCGCUCaGCaCGaCG- -5'
11106 3' -53.8 NC_002794.1 + 20645 0.67 0.96357
Target:  5'- aCggCUGGUGCgaGCaagGGGUCcUGCUGCu -3'
miRNA:   3'- aGaaGACCAUGg-CG---CUCAGcACGACG- -5'
11106 3' -53.8 NC_002794.1 + 56886 0.67 0.956075
Target:  5'- gUCUUCUacauccaGGUGCCGCGcGUggccacgggcgcCGgGCUGCc -3'
miRNA:   3'- -AGAAGA-------CCAUGGCGCuCA------------GCaCGACG- -5'
11106 3' -53.8 NC_002794.1 + 92076 0.68 0.948446
Target:  5'- -----cGGUGCUGCcAGUCGUGCUa- -3'
miRNA:   3'- agaagaCCAUGGCGcUCAGCACGAcg -5'
11106 3' -53.8 NC_002794.1 + 125049 0.69 0.923821
Target:  5'- ---cCUGGUGCaCGCGAacccGccgaccaucaaguUCGUGCUGCu -3'
miRNA:   3'- agaaGACCAUG-GCGCU----C-------------AGCACGACG- -5'
11106 3' -53.8 NC_002794.1 + 107351 0.69 0.918838
Target:  5'- --gUCcGGUcGCCGCGAgcgaucuccuccGUCGUGCUcGCg -3'
miRNA:   3'- agaAGaCCA-UGGCGCU------------CAGCACGA-CG- -5'
11106 3' -53.8 NC_002794.1 + 138677 0.69 0.907082
Target:  5'- --gUCUGcGUgGCgGCGGGUCGUGaUGCa -3'
miRNA:   3'- agaAGAC-CA-UGgCGCUCAGCACgACG- -5'
11106 3' -53.8 NC_002794.1 + 123265 0.7 0.873672
Target:  5'- cCggCUGGUccggGCCGCG-GUCGUcgcgggagaccuGCUGCu -3'
miRNA:   3'- aGaaGACCA----UGGCGCuCAGCA------------CGACG- -5'
11106 3' -53.8 NC_002794.1 + 114263 0.72 0.809451
Target:  5'- gUCUcCgGGg---GCGGGUCGUGCUGCa -3'
miRNA:   3'- -AGAaGaCCauggCGCUCAGCACGACG- -5'
11106 3' -53.8 NC_002794.1 + 104890 0.74 0.705536
Target:  5'- -----cGGgccgGCCGCGAGgcgcCGUGCUGCu -3'
miRNA:   3'- agaagaCCa---UGGCGCUCa---GCACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.