miRNA display CGI


Results 1 - 20 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11106 5' -60.2 NC_002794.1 + 103286 0.66 0.84043
Target:  5'- aGCGCguacguguccuUGGCGACCaugaGCaGCUGGuuGAUGCa -3'
miRNA:   3'- -UGCG-----------ACUGCUGG----CG-CGGCCugCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 180284 0.66 0.84043
Target:  5'- uCGCggcccGCGccGCCGCaacacGCCGGcCGGCGCg -3'
miRNA:   3'- uGCGac---UGC--UGGCG-----CGGCCuGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 68974 0.66 0.84043
Target:  5'- cCGCg---GGCCGCgacGCCGGcguCGACGCu -3'
miRNA:   3'- uGCGacugCUGGCG---CGGCCu--GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 119432 0.66 0.84043
Target:  5'- uCGCagguccGACGGCgGCGgCGGugGCGGCGUc -3'
miRNA:   3'- uGCGa-----CUGCUGgCGCgGCC--UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 136412 0.66 0.84043
Target:  5'- uGCGCUGaACGGCgGUccauaaCCGGAgCGGCGg -3'
miRNA:   3'- -UGCGAC-UGCUGgCGc-----GGCCU-GCUGCg -5'
11106 5' -60.2 NC_002794.1 + 94226 0.66 0.84043
Target:  5'- gGCGacgGGCGGgCGgGCCGG-UGACGg -3'
miRNA:   3'- -UGCga-CUGCUgGCgCGGCCuGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 50655 0.66 0.84043
Target:  5'- aGCGaaaacaUGGCGGCCGCGgCGcuCGcCGCg -3'
miRNA:   3'- -UGCg-----ACUGCUGGCGCgGCcuGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 16301 0.66 0.839661
Target:  5'- aGC-CUGGCGGCCGCGgCCGGcUGGaucccccUGCc -3'
miRNA:   3'- -UGcGACUGCUGGCGC-GGCCuGCU-------GCG- -5'
11106 5' -60.2 NC_002794.1 + 150948 0.66 0.838119
Target:  5'- uGCGCUGgguguucgagaucuACGACC-UGCCcucggccggucuGGACGACGa -3'
miRNA:   3'- -UGCGAC--------------UGCUGGcGCGG------------CCUGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 276 0.66 0.835793
Target:  5'- gACGCgagGACGGCgGCccuggcgcgccgaacGCCGGGCc-CGCc -3'
miRNA:   3'- -UGCGa--CUGCUGgCG---------------CGGCCUGcuGCG- -5'
11106 5' -60.2 NC_002794.1 + 70989 0.66 0.832668
Target:  5'- aACGCcucGAUGGCCGUGagcCCGGAC--CGCa -3'
miRNA:   3'- -UGCGa--CUGCUGGCGC---GGCCUGcuGCG- -5'
11106 5' -60.2 NC_002794.1 + 124013 0.66 0.832668
Target:  5'- -aGCgGGCGGCCGCGgaagagaCGGugGcCGUc -3'
miRNA:   3'- ugCGaCUGCUGGCGCg------GCCugCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 134739 0.66 0.832668
Target:  5'- gGCGCUGAuuCGGCaauucaccCCGGACGuCGCg -3'
miRNA:   3'- -UGCGACU--GCUGgcgc----GGCCUGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 193801 0.66 0.832668
Target:  5'- gACGCcGGCGcCCGCucguCUGGcgcCGACGCg -3'
miRNA:   3'- -UGCGaCUGCuGGCGc---GGCCu--GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 141947 0.66 0.832668
Target:  5'- -gGC-GGCGACC-CGuuGGACGGC-Cg -3'
miRNA:   3'- ugCGaCUGCUGGcGCggCCUGCUGcG- -5'
11106 5' -60.2 NC_002794.1 + 21603 0.66 0.832668
Target:  5'- gUGCccgUGACccACCGCGCCgucgccgggaGGACGACGa -3'
miRNA:   3'- uGCG---ACUGc-UGGCGCGG----------CCUGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 123772 0.66 0.832668
Target:  5'- gGCGUgGACGccuCCGUGuuGGAggcggUGGCGCc -3'
miRNA:   3'- -UGCGaCUGCu--GGCGCggCCU-----GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 128277 0.66 0.832668
Target:  5'- aGCGCggagccGACGGCCGUcuucgacaCCGaGACGGCGa -3'
miRNA:   3'- -UGCGa-----CUGCUGGCGc-------GGC-CUGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 179248 0.66 0.832668
Target:  5'- gGCGUcGGCGAgaCCGcCGCCGa--GACGCu -3'
miRNA:   3'- -UGCGaCUGCU--GGC-GCGGCcugCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 126290 0.66 0.832668
Target:  5'- uUGCUGuGCGcCgCGCGCCuGGCGGUGCa -3'
miRNA:   3'- uGCGAC-UGCuG-GCGCGGcCUGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.