miRNA display CGI


Results 41 - 60 of 398 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11106 5' -60.2 NC_002794.1 + 103286 0.66 0.84043
Target:  5'- aGCGCguacguguccuUGGCGACCaugaGCaGCUGGuuGAUGCa -3'
miRNA:   3'- -UGCG-----------ACUGCUGG----CG-CGGCCugCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 128277 0.66 0.832668
Target:  5'- aGCGCggagccGACGGCCGUcuucgacaCCGaGACGGCGa -3'
miRNA:   3'- -UGCGa-----CUGCUGGCGc-------GGC-CUGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 123772 0.66 0.832668
Target:  5'- gGCGUgGACGccuCCGUGuuGGAggcggUGGCGCc -3'
miRNA:   3'- -UGCGaCUGCu--GGCGCggCCU-----GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 21603 0.66 0.832668
Target:  5'- gUGCccgUGACccACCGCGCCgucgccgggaGGACGACGa -3'
miRNA:   3'- uGCG---ACUGc-UGGCGCGG----------CCUGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 115998 0.66 0.824745
Target:  5'- cGCGgaGACcgcggaGACCGCGgUGGcgauUGGCGCg -3'
miRNA:   3'- -UGCgaCUG------CUGGCGCgGCCu---GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 126578 0.66 0.824745
Target:  5'- cUGCUGAUcaucuuaccggGACUgaGCGCCGaGGcCGGCGCc -3'
miRNA:   3'- uGCGACUG-----------CUGG--CGCGGC-CU-GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 190991 0.66 0.824745
Target:  5'- aGCGC-GGCGACgGCGUCGcGAuCGGcCGUu -3'
miRNA:   3'- -UGCGaCUGCUGgCGCGGC-CU-GCU-GCG- -5'
11106 5' -60.2 NC_002794.1 + 127607 0.66 0.824745
Target:  5'- cCGCUGAgCGG-CGCGgaCCGGAcucgucguCGACGCc -3'
miRNA:   3'- uGCGACU-GCUgGCGC--GGCCU--------GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 86074 0.66 0.831883
Target:  5'- cAUGCgGAUcucaucgGACCGcCGCCGGGacgGAUGCu -3'
miRNA:   3'- -UGCGaCUG-------CUGGC-GCGGCCUg--CUGCG- -5'
11106 5' -60.2 NC_002794.1 + 59349 0.66 0.831883
Target:  5'- cGCGCUcuacaacGGCuGCUGCGCCaccACGGCGCc -3'
miRNA:   3'- -UGCGA-------CUGcUGGCGCGGcc-UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 99282 0.66 0.827139
Target:  5'- cGCGCUcccgggcucuuccGCGACCGcCGCCaccaaguacacgacGGAgGACGCc -3'
miRNA:   3'- -UGCGAc------------UGCUGGC-GCGG--------------CCUgCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 141947 0.66 0.832668
Target:  5'- -gGC-GGCGACC-CGuuGGACGGC-Cg -3'
miRNA:   3'- ugCGaCUGCUGGcGCggCCUGCUGcG- -5'
11106 5' -60.2 NC_002794.1 + 193801 0.66 0.832668
Target:  5'- gACGCcGGCGcCCGCucguCUGGcgcCGACGCg -3'
miRNA:   3'- -UGCGaCUGCuGGCGc---GGCCu--GCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 134739 0.66 0.832668
Target:  5'- gGCGCUGAuuCGGCaauucaccCCGGACGuCGCg -3'
miRNA:   3'- -UGCGACU--GCUGgcgc----GGCCUGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 124013 0.66 0.832668
Target:  5'- -aGCgGGCGGCCGCGgaagagaCGGugGcCGUc -3'
miRNA:   3'- ugCGaCUGCUGGCGCg------GCCugCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 70989 0.66 0.832668
Target:  5'- aACGCcucGAUGGCCGUGagcCCGGAC--CGCa -3'
miRNA:   3'- -UGCGa--CUGCUGGCGC---GGCCUGcuGCG- -5'
11106 5' -60.2 NC_002794.1 + 70331 0.67 0.791564
Target:  5'- cGCGaaGACG-CCGacgGCCGGGCGccCGCu -3'
miRNA:   3'- -UGCgaCUGCuGGCg--CGGCCUGCu-GCG- -5'
11106 5' -60.2 NC_002794.1 + 55349 0.67 0.791564
Target:  5'- cGCGCccgaGGCGGCCGaggcgGCCGaGGCGGCcgagGCg -3'
miRNA:   3'- -UGCGa---CUGCUGGCg----CGGC-CUGCUG----CG- -5'
11106 5' -60.2 NC_002794.1 + 23605 0.67 0.791564
Target:  5'- cCGCcGAccCGACCccgcggGCGcCCGGACG-CGCg -3'
miRNA:   3'- uGCGaCU--GCUGG------CGC-GGCCUGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 124584 0.67 0.791564
Target:  5'- uGCGCUcGAuCGugCGCGUgcugaaGGACaACGCg -3'
miRNA:   3'- -UGCGA-CU-GCugGCGCGg-----CCUGcUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.