miRNA display CGI


Results 61 - 80 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11106 5' -60.2 NC_002794.1 + 124390 0.67 0.782932
Target:  5'- uCGC-GGCGGCgCGuCGCCGGucguCGGgGCg -3'
miRNA:   3'- uGCGaCUGCUG-GC-GCGGCCu---GCUgCG- -5'
11106 5' -60.2 NC_002794.1 + 92409 0.67 0.782932
Target:  5'- uCGCUGAuCGACCcgaGCaCGGGCGAgGa -3'
miRNA:   3'- uGCGACU-GCUGGcg-CG-GCCUGCUgCg -5'
11106 5' -60.2 NC_002794.1 + 98951 0.67 0.782932
Target:  5'- -gGCUGG-GGCuCGUGCUGGGCGcCGUc -3'
miRNA:   3'- ugCGACUgCUG-GCGCGGCCUGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 32577 0.67 0.782932
Target:  5'- cGCGC--GCGGCgGUGCCGGGgcCGGgGCc -3'
miRNA:   3'- -UGCGacUGCUGgCGCGGCCU--GCUgCG- -5'
11106 5' -60.2 NC_002794.1 + 92316 0.67 0.782932
Target:  5'- gGCGCgGGCGGCgGgGgcCCGGGCGG-GCg -3'
miRNA:   3'- -UGCGaCUGCUGgCgC--GGCCUGCUgCG- -5'
11106 5' -60.2 NC_002794.1 + 180017 0.67 0.782932
Target:  5'- cACGaC-GACGGCCGCgGCCGucCGAccCGCa -3'
miRNA:   3'- -UGC-GaCUGCUGGCG-CGGCcuGCU--GCG- -5'
11106 5' -60.2 NC_002794.1 + 139685 0.67 0.782932
Target:  5'- -aGCcGcCGGCCGUGCCGGAC-AgGUa -3'
miRNA:   3'- ugCGaCuGCUGGCGCGGCCUGcUgCG- -5'
11106 5' -60.2 NC_002794.1 + 83007 0.67 0.788988
Target:  5'- cACGCgccCGAUCugcgccccgucccgGCGCCGGGCGGCa- -3'
miRNA:   3'- -UGCGacuGCUGG--------------CGCGGCCUGCUGcg -5'
11106 5' -60.2 NC_002794.1 + 123161 0.67 0.788988
Target:  5'- aACGUgGACGACUGCuacgaggagaacguGCCcGACGGcCGCg -3'
miRNA:   3'- -UGCGaCUGCUGGCG--------------CGGcCUGCU-GCG- -5'
11106 5' -60.2 NC_002794.1 + 70331 0.67 0.791564
Target:  5'- cGCGaaGACG-CCGacgGCCGGGCGccCGCu -3'
miRNA:   3'- -UGCgaCUGCuGGCg--CGGCCUGCu-GCG- -5'
11106 5' -60.2 NC_002794.1 + 55349 0.67 0.791564
Target:  5'- cGCGCccgaGGCGGCCGaggcgGCCGaGGCGGCcgagGCg -3'
miRNA:   3'- -UGCGa---CUGCUGGCg----CGGC-CUGCUG----CG- -5'
11106 5' -60.2 NC_002794.1 + 23605 0.67 0.791564
Target:  5'- cCGCcGAccCGACCccgcggGCGcCCGGACG-CGCg -3'
miRNA:   3'- uGCGaCU--GCUGG------CGC-GGCCUGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 124584 0.67 0.791564
Target:  5'- uGCGCUcGAuCGugCGCGUgcugaaGGACaACGCg -3'
miRNA:   3'- -UGCGA-CU-GCugGCGCGg-----CCUGcUGCG- -5'
11106 5' -60.2 NC_002794.1 + 181684 0.67 0.791564
Target:  5'- uGCGCgGACcGCCGCGCCucGGCccacACGCu -3'
miRNA:   3'- -UGCGaCUGcUGGCGCGGc-CUGc---UGCG- -5'
11106 5' -60.2 NC_002794.1 + 186646 0.67 0.791564
Target:  5'- cGCGCgGGuCGGCCGCGCgcacccCGuacACGGCGCc -3'
miRNA:   3'- -UGCGaCU-GCUGGCGCG------GCc--UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 34340 0.67 0.791564
Target:  5'- -gGC-GACGGCCGCGCCGuucCGccCGCu -3'
miRNA:   3'- ugCGaCUGCUGGCGCGGCcu-GCu-GCG- -5'
11106 5' -60.2 NC_002794.1 + 32872 0.67 0.791564
Target:  5'- -gGCgGGCGGCgGCGgCGG-CGGCGg -3'
miRNA:   3'- ugCGaCUGCUGgCGCgGCCuGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 37537 0.67 0.790707
Target:  5'- -gGCUGGCGAacaGcCGCCGGAggggccaCGACcGCg -3'
miRNA:   3'- ugCGACUGCUgg-C-GCGGCCU-------GCUG-CG- -5'
11106 5' -60.2 NC_002794.1 + 102320 0.67 0.790707
Target:  5'- cGCGCUcgucaugaaaggcGugGACCugguGCGCaaGACGGCGUg -3'
miRNA:   3'- -UGCGA-------------CugCUGG----CGCGgcCUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 91758 0.67 0.782932
Target:  5'- -gGCgGGCGgcACCGCGCaGGACGGgcUGCu -3'
miRNA:   3'- ugCGaCUGC--UGGCGCGgCCUGCU--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.