miRNA display CGI


Results 1 - 20 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11106 5' -60.2 NC_002794.1 + 92262 0.92 0.026584
Target:  5'- uCGCUGGCGGCgGCGCCGGGCGAgGCg -3'
miRNA:   3'- uGCGACUGCUGgCGCGGCCUGCUgCG- -5'
11106 5' -60.2 NC_002794.1 + 56318 0.88 0.050571
Target:  5'- uCGCUGGCGGCCGUgGCCGG-CGACGCg -3'
miRNA:   3'- uGCGACUGCUGGCG-CGGCCuGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 102699 0.87 0.058928
Target:  5'- gUGCUGACGGCCGggcCGCCGGACgGGCGCg -3'
miRNA:   3'- uGCGACUGCUGGC---GCGGCCUG-CUGCG- -5'
11106 5' -60.2 NC_002794.1 + 118284 0.82 0.134353
Target:  5'- gGCGUcGGgGACCGCGCCGGGCGcguCGCu -3'
miRNA:   3'- -UGCGaCUgCUGGCGCGGCCUGCu--GCG- -5'
11106 5' -60.2 NC_002794.1 + 14454 0.81 0.148053
Target:  5'- cCGCgGGCGACCGUGUCGaGCGGCGCg -3'
miRNA:   3'- uGCGaCUGCUGGCGCGGCcUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 120055 0.81 0.151672
Target:  5'- gGCGgUGGCGGCCGCGgaGGcCGACGCg -3'
miRNA:   3'- -UGCgACUGCUGGCGCggCCuGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 34730 0.8 0.175114
Target:  5'- gGCGCgGGCGGCCGCagaGCgCGcGACGGCGCg -3'
miRNA:   3'- -UGCGaCUGCUGGCG---CG-GC-CUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 120125 0.8 0.183619
Target:  5'- cGCGCgacGGCGACCggggacgggccgGUGCCGGACGACGa -3'
miRNA:   3'- -UGCGa--CUGCUGG------------CGCGGCCUGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 145729 0.79 0.201728
Target:  5'- gGCGCUGgagGCGGCgGCGCCGGcauCGACGg -3'
miRNA:   3'- -UGCGAC---UGCUGgCGCGGCCu--GCUGCg -5'
11106 5' -60.2 NC_002794.1 + 19326 0.79 0.211352
Target:  5'- cGCGCUGGCGACCcgcGCGCCGGucacccccuCGcCGCc -3'
miRNA:   3'- -UGCGACUGCUGG---CGCGGCCu--------GCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 102148 0.79 0.19706
Target:  5'- uGCGCUucggcGGCGugCGCGCCGGGgccauCGugGCg -3'
miRNA:   3'- -UGCGA-----CUGCugGCGCGGCCU-----GCugCG- -5'
11106 5' -60.2 NC_002794.1 + 112320 0.79 0.19706
Target:  5'- gGCGCcGACGGCggggagCGCGCCGGccgGCGGCGCc -3'
miRNA:   3'- -UGCGaCUGCUG------GCGCGGCC---UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 82660 0.79 0.206492
Target:  5'- cGCGCUcGACG-CCGCGCCGG-CGGauCGCa -3'
miRNA:   3'- -UGCGA-CUGCuGGCGCGGCCuGCU--GCG- -5'
11106 5' -60.2 NC_002794.1 + 21920 0.79 0.192487
Target:  5'- gGCGgaGACGACgGCGgCGGcGCGGCGCu -3'
miRNA:   3'- -UGCgaCUGCUGgCGCgGCC-UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 64810 0.78 0.218322
Target:  5'- gACGCcgcgGACGGCgGCGagccggcgccgacgaCCGGACGGCGCg -3'
miRNA:   3'- -UGCGa---CUGCUGgCGC---------------GGCCUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 157315 0.78 0.231788
Target:  5'- gGCGCUcgaaGACGAagaCGCGCguccggucgacCGGACGACGCg -3'
miRNA:   3'- -UGCGA----CUGCUg--GCGCG-----------GCCUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 91200 0.78 0.242616
Target:  5'- gACGCUGuucgcggacgGCGACgCGaCGgCGGACGGCGCg -3'
miRNA:   3'- -UGCGAC----------UGCUG-GC-GCgGCCUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 134474 0.78 0.241515
Target:  5'- gGCGCUcucgucgccaGACCGCGCgaccCGGACGACGCg -3'
miRNA:   3'- -UGCGAcug-------CUGGCGCG----GCCUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 144978 0.77 0.259645
Target:  5'- gACGgUGucGCGACCgGCGCCGGGCGucCGCc -3'
miRNA:   3'- -UGCgAC--UGCUGG-CGCGGCCUGCu-GCG- -5'
11106 5' -60.2 NC_002794.1 + 12180 0.77 0.265534
Target:  5'- cCGCcGACGccGCCGCgGCCGGGCGcCGCu -3'
miRNA:   3'- uGCGaCUGC--UGGCG-CGGCCUGCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.