Results 21 - 40 of 398 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11106 | 5' | -60.2 | NC_002794.1 | + | 144978 | 0.77 | 0.259645 |
Target: 5'- gACGgUGucGCGACCgGCGCCGGGCGucCGCc -3' miRNA: 3'- -UGCgAC--UGCUGG-CGCGGCCUGCu-GCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 107523 | 0.77 | 0.265534 |
Target: 5'- gACGCcGACGGCCggcgcgGCGCCGGcgGCGACGa -3' miRNA: 3'- -UGCGaCUGCUGG------CGCGGCC--UGCUGCg -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 106976 | 0.76 | 0.299211 |
Target: 5'- cGCGC-GGCGGCCggcacggcgguggcgGCGCUGGcCGACGCg -3' miRNA: 3'- -UGCGaCUGCUGG---------------CGCGGCCuGCUGCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 128940 | 0.75 | 0.352054 |
Target: 5'- aACGUccgGugGAgcCUGCGCCGGACGAguCGCu -3' miRNA: 3'- -UGCGa--CugCU--GGCGCGGCCUGCU--GCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 122680 | 0.75 | 0.352054 |
Target: 5'- -gGCUGugccgguCGcGCCaGCGCCGGGCGACGUu -3' miRNA: 3'- ugCGACu------GC-UGG-CGCGGCCUGCUGCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 32262 | 0.75 | 0.352054 |
Target: 5'- gGCGCUcGACGGCCG-GCCGaucggcgaGCGACGCc -3' miRNA: 3'- -UGCGA-CUGCUGGCgCGGCc-------UGCUGCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 93994 | 0.75 | 0.330432 |
Target: 5'- gGCGCgGACGcCgGCGCCGG-CGGCGg -3' miRNA: 3'- -UGCGaCUGCuGgCGCGGCCuGCUGCg -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 20048 | 0.75 | 0.337529 |
Target: 5'- cGCGCUcGACcaGAUCGCGCUGuuCGACGCg -3' miRNA: 3'- -UGCGA-CUG--CUGGCGCGGCcuGCUGCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 108202 | 0.75 | 0.337529 |
Target: 5'- gGCGCUG-CGccGCCGCGCCGGccuCG-CGCc -3' miRNA: 3'- -UGCGACuGC--UGGCGCGGCCu--GCuGCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 138439 | 0.75 | 0.352054 |
Target: 5'- cGCGgUGGCGGCgGCGCCucGGccuGCGACGUg -3' miRNA: 3'- -UGCgACUGCUGgCGCGG--CC---UGCUGCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 104448 | 0.75 | 0.359481 |
Target: 5'- cCGCgGGCGGCCcgaGC-CCGGGCGGCGUg -3' miRNA: 3'- uGCGaCUGCUGG---CGcGGCCUGCUGCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 119898 | 0.75 | 0.359481 |
Target: 5'- gGCGgaucUUGGCGGCCGaCGCCGGggacauccgcACGGCGCc -3' miRNA: 3'- -UGC----GACUGCUGGC-GCGGCC----------UGCUGCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 187273 | 0.75 | 0.337529 |
Target: 5'- cGCGCgucuCGAacaCCGCGCCGGACGGgGUc -3' miRNA: 3'- -UGCGacu-GCU---GGCGCGGCCUGCUgCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 81545 | 0.75 | 0.345463 |
Target: 5'- aGCGCUGGacggcugccgccgcCGccgccGCCGCGCCGGACGAagaagaagacggaccCGCg -3' miRNA: 3'- -UGCGACU--------------GC-----UGGCGCGGCCUGCU---------------GCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 51091 | 0.75 | 0.336815 |
Target: 5'- cGCGCUcggaaaaGACGACCGCGCCucgcgcucGGACGuCGa -3' miRNA: 3'- -UGCGA-------CUGCUGGCGCGG--------CCUGCuGCg -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 73721 | 0.75 | 0.322753 |
Target: 5'- gACGCUGucgcucaacuacuACGACCGCGCCcGGcuCGaACGCg -3' miRNA: 3'- -UGCGAC-------------UGCUGGCGCGG-CCu-GC-UGCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 53538 | 0.74 | 0.38241 |
Target: 5'- gGCGC-GGCGGCCGCacaGCCcGugGACGUa -3' miRNA: 3'- -UGCGaCUGCUGGCG---CGGcCugCUGCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 70056 | 0.74 | 0.390266 |
Target: 5'- uCGCccggucgGGCGGCCGCaGCCGcagcaaGGCGACGCa -3' miRNA: 3'- uGCGa------CUGCUGGCG-CGGC------CUGCUGCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 53751 | 0.74 | 0.38163 |
Target: 5'- cCGCUGcCGccGCCGCuGCCGGcggcgggacgcccGCGACGCg -3' miRNA: 3'- uGCGACuGC--UGGCG-CGGCC-------------UGCUGCG- -5' |
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11106 | 5' | -60.2 | NC_002794.1 | + | 50769 | 0.74 | 0.38241 |
Target: 5'- -gGCggcGGCGACgGCGCgucuCGGGCGGCGCc -3' miRNA: 3'- ugCGa--CUGCUGgCGCG----GCCUGCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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