miRNA display CGI


Results 21 - 40 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11106 5' -60.2 NC_002794.1 + 107523 0.77 0.265534
Target:  5'- gACGCcGACGGCCggcgcgGCGCCGGcgGCGACGa -3'
miRNA:   3'- -UGCGaCUGCUGG------CGCGGCC--UGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 12180 0.77 0.265534
Target:  5'- cCGCcGACGccGCCGCgGCCGGGCGcCGCu -3'
miRNA:   3'- uGCGaCUGC--UGGCG-CGGCCUGCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 106976 0.76 0.299211
Target:  5'- cGCGC-GGCGGCCggcacggcgguggcgGCGCUGGcCGACGCg -3'
miRNA:   3'- -UGCGaCUGCUGG---------------CGCGGCCuGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 73721 0.75 0.322753
Target:  5'- gACGCUGucgcucaacuacuACGACCGCGCCcGGcuCGaACGCg -3'
miRNA:   3'- -UGCGAC-------------UGCUGGCGCGG-CCu-GC-UGCG- -5'
11106 5' -60.2 NC_002794.1 + 93994 0.75 0.330432
Target:  5'- gGCGCgGACGcCgGCGCCGG-CGGCGg -3'
miRNA:   3'- -UGCGaCUGCuGgCGCGGCCuGCUGCg -5'
11106 5' -60.2 NC_002794.1 + 51091 0.75 0.336815
Target:  5'- cGCGCUcggaaaaGACGACCGCGCCucgcgcucGGACGuCGa -3'
miRNA:   3'- -UGCGA-------CUGCUGGCGCGG--------CCUGCuGCg -5'
11106 5' -60.2 NC_002794.1 + 108202 0.75 0.337529
Target:  5'- gGCGCUG-CGccGCCGCGCCGGccuCG-CGCc -3'
miRNA:   3'- -UGCGACuGC--UGGCGCGGCCu--GCuGCG- -5'
11106 5' -60.2 NC_002794.1 + 20048 0.75 0.337529
Target:  5'- cGCGCUcGACcaGAUCGCGCUGuuCGACGCg -3'
miRNA:   3'- -UGCGA-CUG--CUGGCGCGGCcuGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 187273 0.75 0.337529
Target:  5'- cGCGCgucuCGAacaCCGCGCCGGACGGgGUc -3'
miRNA:   3'- -UGCGacu-GCU---GGCGCGGCCUGCUgCG- -5'
11106 5' -60.2 NC_002794.1 + 81545 0.75 0.345463
Target:  5'- aGCGCUGGacggcugccgccgcCGccgccGCCGCGCCGGACGAagaagaagacggaccCGCg -3'
miRNA:   3'- -UGCGACU--------------GC-----UGGCGCGGCCUGCU---------------GCG- -5'
11106 5' -60.2 NC_002794.1 + 122680 0.75 0.352054
Target:  5'- -gGCUGugccgguCGcGCCaGCGCCGGGCGACGUu -3'
miRNA:   3'- ugCGACu------GC-UGG-CGCGGCCUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 32262 0.75 0.352054
Target:  5'- gGCGCUcGACGGCCG-GCCGaucggcgaGCGACGCc -3'
miRNA:   3'- -UGCGA-CUGCUGGCgCGGCc-------UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 128940 0.75 0.352054
Target:  5'- aACGUccgGugGAgcCUGCGCCGGACGAguCGCu -3'
miRNA:   3'- -UGCGa--CugCU--GGCGCGGCCUGCU--GCG- -5'
11106 5' -60.2 NC_002794.1 + 138439 0.75 0.352054
Target:  5'- cGCGgUGGCGGCgGCGCCucGGccuGCGACGUg -3'
miRNA:   3'- -UGCgACUGCUGgCGCGG--CC---UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 119898 0.75 0.359481
Target:  5'- gGCGgaucUUGGCGGCCGaCGCCGGggacauccgcACGGCGCc -3'
miRNA:   3'- -UGC----GACUGCUGGC-GCGGCC----------UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 104448 0.75 0.359481
Target:  5'- cCGCgGGCGGCCcgaGC-CCGGGCGGCGUg -3'
miRNA:   3'- uGCGaCUGCUGG---CGcGGCCUGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 179690 0.74 0.367016
Target:  5'- gACGgUGGCGGCgGCGaCGGugGCGACGCc -3'
miRNA:   3'- -UGCgACUGCUGgCGCgGCC--UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 118674 0.74 0.374659
Target:  5'- gACGCccGCGGCCGcCGCCGG-CGGCaGCg -3'
miRNA:   3'- -UGCGacUGCUGGC-GCGGCCuGCUG-CG- -5'
11106 5' -60.2 NC_002794.1 + 53751 0.74 0.38163
Target:  5'- cCGCUGcCGccGCCGCuGCCGGcggcgggacgcccGCGACGCg -3'
miRNA:   3'- uGCGACuGC--UGGCG-CGGCC-------------UGCUGCG- -5'
11106 5' -60.2 NC_002794.1 + 53538 0.74 0.38241
Target:  5'- gGCGC-GGCGGCCGCacaGCCcGugGACGUa -3'
miRNA:   3'- -UGCGaCUGCUGGCG---CGGcCugCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.